-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_381

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 6980, 7173
Sorry, prediction GeneMark_model.107479_t fails validation.
(ATG)	 TG	6373-6591	GT	GGG
(GTT)	 AG	6623-6693	GT	AAG
(AGA)	 AG	6730-6846	GT	AGG
(GAG)	 AG	6888-6899	GT	AAG
(AGG)	 AG	6926-6949	GT	GAG
(GAG)	 AG	6980-7173	GT	GGG
-recovered GeneMark_model.107479_t, initial, 6373, 6591
-recovered GeneMark_model.107479_t, terminal, 6888, 6899
-recovered GeneMark_model.107479_t, internal, 6623, 6693
-recovered GeneMark_model.107479_t, internal, 6730, 6846
-recovered GeneMark_model.107479_t, internal, 6888, 6899
-recovered GeneMark_model.107479_t, internal, 6926, 6949
-recovered GeneMark_model.107479_t, internal, 6980, 7173
Valid prediction for GeneMark_model.107478_t
Couldn't classify 528, 555
Couldn't classify 6380, 6591
Sorry, prediction snap_scaffold_381-snap.1-T1 fails validation.
(CGT)	 AG	528-555	GT	AGG
(TGG)	 AG	2161-2287	GT	ACG
(CAG)	 AG	6380-6591	GT	GGG
-recovered snap_scaffold_381-snap.1-T1, internal, 528, 555
-recovered snap_scaffold_381-snap.1-T1, internal, 2161, 2287
-recovered snap_scaffold_381-snap.1-T1, internal, 6380, 6591

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 850, 1168
Sorry, prediction Augustus_model.g41055.t1 fails validation.
(GAA)	 AG	850-1168	GT	CGG
(ATG)	 AG	1279-1292	GT	GAG
-recovered Augustus_model.g41055.t1, initial, 1279, 1292
-recovered Augustus_model.g41055.t1, terminal, 1279, 1292
-recovered Augustus_model.g41055.t1, internal, 850, 1168
-recovered Augustus_model.g41055.t1, internal, 1279, 1292
Couldn't classify 850, 1168
Sorry, prediction GlimmerHMM_glimmerT_61774-T1 fails validation.
(GAA)	 AG	850-1168	GT	CGG
(TGA)	 AG	5258-5379	AT	AGA
-recovered GlimmerHMM_glimmerT_61774-T1, terminal, 5258, 5379
-recovered GlimmerHMM_glimmerT_61774-T1, internal, 850, 1168

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7535
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support