-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_380

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107476_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 7098, 7278
Sorry, prediction GeneMark_model.107475_t fails validation.
(ATG)	 TG	5154-5197	GT	GGG
(AAG)	 AG	5228-5248	GT	GCG
(GAG)	 AG	5277-5303	GT	ACG
(AAG)	 AG	5342-5419	GT	GAG
(AGG)	 AG	5450-5479	GT	AGG
(AAA)	 AG	5563-5592	GT	GGG
(GGA)	 AG	6980-7066	GT	GAG
(GGA)	 AG	7098-7278	GT	CTG
-recovered GeneMark_model.107475_t, initial, 5154, 5197
-recovered GeneMark_model.107475_t, internal, 5228, 5248
-recovered GeneMark_model.107475_t, internal, 5277, 5303
-recovered GeneMark_model.107475_t, internal, 5342, 5419
-recovered GeneMark_model.107475_t, internal, 5450, 5479
-recovered GeneMark_model.107475_t, internal, 5563, 5592
-recovered GeneMark_model.107475_t, internal, 6980, 7066
-recovered GeneMark_model.107475_t, internal, 7098, 7278
Couldn't classify 3738, 4036
Couldn't classify 5320, 5530
Sorry, prediction snap_scaffold_380-snap.1-T1 fails validation.
(AGC)	 AG	3738-4036	GT	CGG
(ACA)	 AG	4341-4869	GT	CTG
(GGG)	 AG	5083-5138	GT	AGG
(GGG)	 AG	5320-5530	GT	AAG
-recovered snap_scaffold_380-snap.1-T1, internal, 3738, 4036
-recovered snap_scaffold_380-snap.1-T1, internal, 4341, 4869
-recovered snap_scaffold_380-snap.1-T1, internal, 5083, 5138
-recovered snap_scaffold_380-snap.1-T1, internal, 5320, 5530
Valid prediction for GeneMark_model.107477_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7536
-exon list size: 32


building trellis

2.9    
5.9    
8.8    
11.8    
14.7    
17.6    
20.6    
23.5    
26.5    
29.4    
32.4    
35.3    
38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
64.7    
67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
88.2    
91.2    
94.1    
97.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support