-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_379

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107473_t
Couldn't classify 5452, 5550
Sorry, prediction snap_scaffold_379-snap.1-T1 fails validation.
(ATG)	 AG	880-963	GT	AGG
(CTC)	 AG	2339-2432	GT	AGG
(CTC)	 AG	2914-3040	GT	AGG
(CGC)	 AG	5452-5550	GT	AGG
-recovered snap_scaffold_379-snap.1-T1, initial, 880, 963
-recovered snap_scaffold_379-snap.1-T1, internal, 880, 963
-recovered snap_scaffold_379-snap.1-T1, internal, 2339, 2432
-recovered snap_scaffold_379-snap.1-T1, internal, 2914, 3040
-recovered snap_scaffold_379-snap.1-T1, internal, 5452, 5550
Valid prediction for HiQ_model.g41054.t1
Valid prediction for GlimmerHMM_glimmerT_61773-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107472_t
Couldn't classify 307, 312
Sorry, prediction GeneMark_model.107474_t fails validation.
(CGA)	 AG	307-312	GT	GTG
(GGA)	 AG	809-880	GT	GAG
(CAG)	 AG	901-996	GT	AGG
(AAA)	 AG	1023-1143	GT	ACG
(ATG)	 AG	1220-1251	GC	CAG
(AAT)	 AG	1305-1331	GT	GAG
(AGA)	 AG	1359-1498	GT	TGG
(GTG)	 AG	1997-2130	GA	AAG
-recovered GeneMark_model.107474_t, initial, 1220, 1251
-recovered GeneMark_model.107474_t, terminal, 1997, 2130
-recovered GeneMark_model.107474_t, internal, 307, 312
-recovered GeneMark_model.107474_t, internal, 809, 880
-recovered GeneMark_model.107474_t, internal, 901, 996
-recovered GeneMark_model.107474_t, internal, 1023, 1143
-recovered GeneMark_model.107474_t, internal, 1220, 1251
-recovered GeneMark_model.107474_t, internal, 1305, 1331
-recovered GeneMark_model.107474_t, internal, 1359, 1498
Valid prediction for snap_scaffold_379-snap.2-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5550, rend_intergenic: 1571  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7569
-exon list size: 31


building trellis

3.0    
6.1    
9.1    
12.1    
15.2    
18.2    
21.2    
24.2    
27.3    
30.3    
33.3    
36.4    
39.4    
42.4    
45.5    
48.5    
51.5    
54.5    
57.6    
60.6    
63.6    
66.7    
69.7    
72.7    
75.8    
78.8    
81.8    
84.8    
87.9    
90.9    
93.9    
97.0    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 5550, rend_intergenic: 1571  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support