-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_378

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61772-T1
Couldn't classify 4294, 4447
Couldn't classify 6611, 6861
Sorry, prediction snap_scaffold_378-snap.3-T1 fails validation.
(CGC)	 AG	4294-4447	GT	CAG
(AGC)	 AG	5604-5880	GT	AAG
(GTT)	 AG	6611-6861	GT	AGG
-recovered snap_scaffold_378-snap.3-T1, internal, 4294, 4447
-recovered snap_scaffold_378-snap.3-T1, internal, 5604, 5880
-recovered snap_scaffold_378-snap.3-T1, internal, 6611, 6861
Valid prediction for GeneMark_model.107471_t
Valid prediction for GeneMark_model.107467_t
add_exon() Sorry, GeneMark_model.107467_t 253-466-terminal-1 is invalid.
Valid prediction for GeneMark_model.107469_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61771-T1
Valid prediction for snap_scaffold_378-snap.1-T1
Valid prediction for GeneMark_model.107470_t
Valid prediction for GeneMark_model.107468_t
Couldn't classify 2602, 2886
Sorry, prediction snap_scaffold_378-snap.2-T1 fails validation.
(AGC)	 AG	2602-2886	GT	AGG
(CAG)	 AG	4837-4865	GC	GAG
-recovered snap_scaffold_378-snap.2-T1, terminal, 4837, 4865
-recovered snap_scaffold_378-snap.2-T1, internal, 2602, 2886
-recovered snap_scaffold_378-snap.2-T1, internal, 4837, 4865

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5008, rend_intergenic: 4294  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7609
-exon list size: 58


building trellis

1.7    
3.3    
5.0    
6.7    
8.3    
10.0    
11.7    
13.3    
15.0    
16.7    
18.3    
20.0    
21.7    
23.3    
25.0    
26.7    
28.3    
30.0    
31.7    
33.3    
35.0    
36.7    
38.3    
40.0    
41.7    
43.3    
45.0    
46.7    
48.3    
50.0    
51.7    
53.3    
55.0    
56.7    
58.3    
60.0    
61.7    
63.3    
65.0    
66.7    
68.3    
70.0    
71.7    
73.3    
75.0    
76.7    
78.3    
80.0    
81.7    
83.3    
85.0    
86.7    
88.3    
90.0    
91.7    
93.3    
95.0    
96.7    
98.3    
-found 4 predictions from path traversal
Error with prediction: snap lend_intergenic: 5008, rend_intergenic: 4294  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support