-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_377

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_377-snap.1-T1
add_exon() Sorry, snap_scaffold_377-snap.1-T1 3152-3498-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_61770-T1
Couldn't classify 2293, 2409
Couldn't classify 5101, 5129
Sorry, prediction GeneMark_model.107466_t fails validation.
(GGA)	 AG	2293-2409	GT	AGG
(GCT)	 AG	2435-2542	GT	GAG
(GGC)	 AG	2593-2637	GT	ACG
(AGA)	 AG	2681-2713	GT	AGG
(GGA)	 AG	2740-2802	GT	AGG
(AGA)	 AG	3122-3196	GT	GAG
(GAG)	 AG	3235-3270	GT	GAG
(GAG)	 AG	3297-3347	GT	GAG
(GAG)	 AG	3428-3553	GT	GAG
(GGA)	 AG	3588-3662	GT	GAG
(GAG)	 AG	3685-3705	GT	AGG
(GGG)	 AG	5047-5076	GT	GGG
(AGA)	 AG	5101-5129	GC	TGG
-recovered GeneMark_model.107466_t, internal, 2293, 2409
-recovered GeneMark_model.107466_t, internal, 2435, 2542
-recovered GeneMark_model.107466_t, internal, 2593, 2637
-recovered GeneMark_model.107466_t, internal, 2681, 2713
-recovered GeneMark_model.107466_t, internal, 2740, 2802
-recovered GeneMark_model.107466_t, internal, 3122, 3196
-recovered GeneMark_model.107466_t, internal, 3235, 3270
-recovered GeneMark_model.107466_t, internal, 3297, 3347
-recovered GeneMark_model.107466_t, internal, 3428, 3553
-recovered GeneMark_model.107466_t, internal, 3588, 3662
-recovered GeneMark_model.107466_t, internal, 3685, 3705
-recovered GeneMark_model.107466_t, internal, 5047, 5076
-recovered GeneMark_model.107466_t, internal, 5101, 5129

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7614
-exon list size: 33


building trellis

2.9    
5.7    
8.6    
11.4    
14.3    
17.1    
20.0    
22.9    
25.7    
28.6    
31.4    
34.3    
37.1    
40.0    
42.9    
45.7    
48.6    
51.4    
54.3    
57.1    
60.0    
62.9    
65.7    
68.6    
71.4    
74.3    
77.1    
80.0    
82.9    
85.7    
88.6    
91.4    
94.3    
97.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support