-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_376

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 616, 739
Sorry, prediction Augustus_model.g41053.t1 fails validation.
(CTC)	 AG	616-739	GT	AGG
(AGA)	 AG	3329-3376	TA	AAT
-recovered Augustus_model.g41053.t1, terminal, 3329, 3376
-recovered Augustus_model.g41053.t1, internal, 616, 739
Valid prediction for GlimmerHMM_glimmerT_61768-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61768-T1 616-799-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61769-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61769-T1 2697-2854-terminal-1 is invalid.
Couldn't classify 1162, 1176
Sorry, prediction GeneMark_model.107465_t fails validation.
(AGA)	 AG	1162-1176	GT	GAG
(AGA)	 AG	1198-1203	GC	GGG
(AAG)	 AG	1229-1264	GT	GGG
(AAG)	 AG	1288-1362	GT	GAG
(GGA)	 AG	1384-1395	GT	GGG
(GCA)	 AG	1420-1449	GT	GAG
(AGA)	 AG	1471-1486	GT	TGG
(CCT)	 AG	1593-1606	GT	GAG
(AGG)	 AG	2295-2384	GT	GAG
(GGG)	 AG	2421-2552	GT	GAG
(GAG)	 AG	2575-2733	GT	ATG
(GAG)	 AG	3232-3301	CG	GAC
-recovered GeneMark_model.107465_t, terminal, 3232, 3301
-recovered GeneMark_model.107465_t, internal, 1162, 1176
-recovered GeneMark_model.107465_t, internal, 1198, 1203
-recovered GeneMark_model.107465_t, internal, 1229, 1264
-recovered GeneMark_model.107465_t, internal, 1288, 1362
-recovered GeneMark_model.107465_t, internal, 1384, 1395
-recovered GeneMark_model.107465_t, internal, 1420, 1449
-recovered GeneMark_model.107465_t, internal, 1471, 1486
-recovered GeneMark_model.107465_t, internal, 1593, 1606
-recovered GeneMark_model.107465_t, internal, 2295, 2384
-recovered GeneMark_model.107465_t, internal, 2421, 2552
-recovered GeneMark_model.107465_t, internal, 2575, 2733
Valid prediction for GeneMark_model.107464_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7614
-exon list size: 36


building trellis

2.6    
5.3    
7.9    
10.5    
13.2    
15.8    
18.4    
21.1    
23.7    
26.3    
28.9    
31.6    
34.2    
36.8    
39.5    
42.1    
44.7    
47.4    
50.0    
52.6    
55.3    
57.9    
60.5    
63.2    
65.8    
68.4    
71.1    
73.7    
76.3    
78.9    
81.6    
84.2    
86.8    
89.5    
92.1    
94.7    
97.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support