-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_375

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 673, 810
Sorry, prediction snap_scaffold_375-snap.1-T1 fails validation.
(GGC)	 AG	673-810	GT	AGG
(GGC)	 AG	1811-1948	GT	AGG
(ACC)	 AG	7134-7195	GA	GAG
-recovered snap_scaffold_375-snap.1-T1, terminal, 7134, 7195
-recovered snap_scaffold_375-snap.1-T1, internal, 673, 810
-recovered snap_scaffold_375-snap.1-T1, internal, 1811, 1948

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1414, 1431
Sorry, prediction GeneMark_model.107463_t fails validation.
(AGA)	 AG	1414-1431	GT	AAG
(ACG)	 AG	1478-1598	CT	GAC
-recovered GeneMark_model.107463_t, terminal, 1414, 1431
-recovered GeneMark_model.107463_t, terminal, 1478, 1598
-recovered GeneMark_model.107463_t, internal, 1414, 1431
Couldn't classify 7575, 7603
Sorry, prediction GeneMark_model.107461_t fails validation.
(ATG)	 TC	7053-7340	GT	GGG
(GTG)	 AG	7450-7517	GT	CGG
(GCT)	 AG	7575-7603	GC	AGG
-recovered GeneMark_model.107461_t, initial, 7053, 7340
-recovered GeneMark_model.107461_t, internal, 7450, 7517
-recovered GeneMark_model.107461_t, internal, 7575, 7603
Valid prediction for GeneMark_model.107462_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7616
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support