-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_374

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 7128, 7227
Sorry, prediction GeneMark_model.107460_t fails validation.
(ATG)	 CC	4220-4224	GT	CTG
(AGA)	 AG	4258-4266	GT	GTG
(GGA)	 AG	4298-4336	GT	GAG
(AAA)	 AG	4360-4377	GT	CTG
(GGA)	 AG	4575-4700	GT	GAG
(AGA)	 AG	4768-4947	GT	GAG
(AGT)	 AG	4976-5005	GT	GAG
(AGA)	 AG	5035-5058	GT	GAG
(GAT)	 AG	5079-5114	GT	GAG
(GAT)	 AG	5135-5215	GT	AGG
(ATA)	 AG	5485-5490	GT	GAG
(AAA)	 AG	5517-5531	GT	AAG
(TAG)	 AG	5611-5622	GT	GCG
(AAG)	 AG	5669-5737	GT	GCG
(TAG)	 AG	5800-5883	GT	GAG
(AGG)	 AG	6963-7013	GT	GAG
(GGG)	 AG	7039-7089	GT	GAG
(GGA)	 AG	7128-7227	GT	TGG
-recovered GeneMark_model.107460_t, initial, 4220, 4224
-recovered GeneMark_model.107460_t, terminal, 5485, 5490
-recovered GeneMark_model.107460_t, internal, 4258, 4266
-recovered GeneMark_model.107460_t, internal, 4298, 4336
-recovered GeneMark_model.107460_t, internal, 4360, 4377
-recovered GeneMark_model.107460_t, internal, 4575, 4700
-recovered GeneMark_model.107460_t, internal, 4768, 4947
-recovered GeneMark_model.107460_t, internal, 4976, 5005
-recovered GeneMark_model.107460_t, internal, 5035, 5058
-recovered GeneMark_model.107460_t, internal, 5079, 5114
-recovered GeneMark_model.107460_t, internal, 5135, 5215
-recovered GeneMark_model.107460_t, internal, 5485, 5490
-recovered GeneMark_model.107460_t, internal, 5517, 5531
-recovered GeneMark_model.107460_t, internal, 5611, 5622
-recovered GeneMark_model.107460_t, internal, 5669, 5737
-recovered GeneMark_model.107460_t, internal, 5800, 5883
-recovered GeneMark_model.107460_t, internal, 6963, 7013
-recovered GeneMark_model.107460_t, internal, 7039, 7089
-recovered GeneMark_model.107460_t, internal, 7128, 7227
Couldn't classify 40, 72
Sorry, prediction GeneMark_model.107458_t fails validation.
(TGG)	 AG	40-72	GT	GAG
(TTT)	 AG	488-499	GT	CGG
(AAC)	 AG	563-643	GT	GTG
(ATC)	 AG	667-725	GT	CAG
(GGC)	 AG	1868-2023	GT	TGG
(GGC)	 AG	2055-2232	GT	AAG
(GAA)	 AG	2994-3044	GT	GCG
(GGA)	 AG	3090-3210	AG	AGA
-recovered GeneMark_model.107458_t, terminal, 3090, 3210
-recovered GeneMark_model.107458_t, internal, 40, 72
-recovered GeneMark_model.107458_t, internal, 488, 499
-recovered GeneMark_model.107458_t, internal, 563, 643
-recovered GeneMark_model.107458_t, internal, 667, 725
-recovered GeneMark_model.107458_t, internal, 1868, 2023
-recovered GeneMark_model.107458_t, internal, 2055, 2232
-recovered GeneMark_model.107458_t, internal, 2994, 3044
Valid prediction for snap_scaffold_374-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107459_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7641
-exon list size: 54


building trellis

1.8    
3.6    
5.4    
7.1    
8.9    
10.7    
12.5    
14.3    
16.1    
17.9    
19.6    
21.4    
23.2    
25.0    
26.8    
28.6    
30.4    
32.1    
33.9    
35.7    
37.5    
39.3    
41.1    
42.9    
44.6    
46.4    
48.2    
50.0    
51.8    
53.6    
55.4    
57.1    
58.9    
60.7    
62.5    
64.3    
66.1    
67.9    
69.6    
71.4    
73.2    
75.0    
76.8    
78.6    
80.4    
82.1    
83.9    
85.7    
87.5    
89.3    
91.1    
92.9    
94.6    
96.4    
98.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support