-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_373

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 5330, 5449
Sorry, prediction snap_scaffold_373-snap.2-T1 fails validation.
(ATG)	 GG	166-225	GT	TAG
(CCC)	 AG	5330-5449	GT	AGG
-recovered snap_scaffold_373-snap.2-T1, initial, 166, 225
-recovered snap_scaffold_373-snap.2-T1, internal, 5330, 5449

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61767-T1
Valid prediction for snap_scaffold_373-snap.1-T1
Couldn't classify 33, 372
Sorry, prediction GeneMark_model.107457_t fails validation.
(GAA)	 AG	33-372	GT	AGG
(AAG)	 AG	394-452	GT	AAG
(CGA)	 AG	2371-2520	GT	GAG
(GCA)	 AG	2547-2654	GT	GAG
(GAG)	 AG	2682-2738	GT	GTG
(GGG)	 AG	2793-2801	GT	GAG
(GAT)	 AG	2822-2839	GT	GGG
(GAA)	 AG	2863-2892	GT	GAG
(GGG)	 AG	2913-3053	GT	GTG
(ACA)	 AG	3630-3653	GC	GAG
(AGC)	 AG	3688-3822	GT	GAG
(GAC)	 AG	3914-4015	GC	CAG
(GAC)	 AG	4038-4046	GT	GAG
(AGA)	 AG	4077-4136	GT	GAG
(ACA)	 AG	4157-4195	GT	CAG
(GAG)	 AG	4213-4218	GC	GAG
(AGA)	 AG	4242-4275	GG	AAG
-recovered GeneMark_model.107457_t, terminal, 4242, 4275
-recovered GeneMark_model.107457_t, internal, 33, 372
-recovered GeneMark_model.107457_t, internal, 394, 452
-recovered GeneMark_model.107457_t, internal, 2371, 2520
-recovered GeneMark_model.107457_t, internal, 2547, 2654
-recovered GeneMark_model.107457_t, internal, 2682, 2738
-recovered GeneMark_model.107457_t, internal, 2793, 2801
-recovered GeneMark_model.107457_t, internal, 2822, 2839
-recovered GeneMark_model.107457_t, internal, 2863, 2892
-recovered GeneMark_model.107457_t, internal, 2913, 3053
-recovered GeneMark_model.107457_t, internal, 3630, 3653
-recovered GeneMark_model.107457_t, internal, 3688, 3822
-recovered GeneMark_model.107457_t, internal, 3914, 4015
-recovered GeneMark_model.107457_t, internal, 4038, 4046
-recovered GeneMark_model.107457_t, internal, 4077, 4136
-recovered GeneMark_model.107457_t, internal, 4157, 4195
-recovered GeneMark_model.107457_t, internal, 4213, 4218

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7602, rend_intergenic: 166  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7644
-exon list size: 43


building trellis

2.2    
4.4    
6.7    
8.9    
11.1    
13.3    
15.6    
17.8    
20.0    
22.2    
24.4    
26.7    
28.9    
31.1    
33.3    
35.6    
37.8    
40.0    
42.2    
44.4    
46.7    
48.9    
51.1    
53.3    
55.6    
57.8    
60.0    
62.2    
64.4    
66.7    
68.9    
71.1    
73.3    
75.6    
77.8    
80.0    
82.2    
84.4    
86.7    
88.9    
91.1    
93.3    
95.6    
97.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 7602, rend_intergenic: 166  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support