-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_372

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61765-T1
Valid prediction for GeneMark_model.107454_t
Couldn't classify 1189, 1369
Sorry, prediction snap_scaffold_372-snap.2-T1 fails validation.
(TAA)	 AG	1189-1369	GT	CGG
(GAT)	 AG	1603-1765	GT	AGG
(GAG)	 AG	2096-2119	AC	AAA
-recovered snap_scaffold_372-snap.2-T1, terminal, 2096, 2119
-recovered snap_scaffold_372-snap.2-T1, internal, 1189, 1369
-recovered snap_scaffold_372-snap.2-T1, internal, 1603, 1765
Couldn't classify 1189, 1369
Sorry, prediction Augustus_model.g41052.t1 fails validation.
(TAA)	 AG	1189-1369	GT	CGG
(CCA)	 AG	3441-3608	GT	AGG
(GAA)	 AG	3919-4060	GT	TGG
(GTT)	 AG	4583-4594	AT	AGA
-recovered Augustus_model.g41052.t1, terminal, 4583, 4594
-recovered Augustus_model.g41052.t1, internal, 1189, 1369
-recovered Augustus_model.g41052.t1, internal, 3441, 3608
-recovered Augustus_model.g41052.t1, internal, 3919, 4060
Valid prediction for snap_scaffold_372-snap.3-T1
Valid prediction for GlimmerHMM_glimmerT_61764-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61764-T1 1189-1373-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 341, 364
Sorry, prediction GeneMark_model.107456_t fails validation.
(AGA)	 AG	341-364	GT	AGG
(AGA)	 AG	387-488	GC	AGG
(ACG)	 AG	511-592	AC	AAA
-recovered GeneMark_model.107456_t, terminal, 511, 592
-recovered GeneMark_model.107456_t, internal, 341, 364
-recovered GeneMark_model.107456_t, internal, 387, 488
Couldn't classify 7331, 7351
Sorry, prediction GeneMark_model.107453_t fails validation.
(ATG)	 CG	6295-6725	GC	GAG
(CAG)	 AG	6757-6939	GT	CAG
(AGG)	 AG	6971-6991	GT	GCG
(AGA)	 AG	7129-7299	GT	CAG
(AGG)	 AG	7331-7351	GT	GCG
-recovered GeneMark_model.107453_t, initial, 6295, 6725
-recovered GeneMark_model.107453_t, internal, 6757, 6939
-recovered GeneMark_model.107453_t, internal, 6971, 6991
-recovered GeneMark_model.107453_t, internal, 7129, 7299
-recovered GeneMark_model.107453_t, internal, 7331, 7351
Valid prediction for snap_scaffold_372-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_61766-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2192, rend_intergenic: 1189  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7645
-exon list size: 44


building trellis

2.2    
4.3    
6.5    
8.7    
10.9    
13.0    
15.2    
17.4    
19.6    
21.7    
23.9    
26.1    
28.3    
30.4    
32.6    
34.8    
37.0    
39.1    
41.3    
43.5    
45.7    
47.8    
50.0    
52.2    
54.3    
56.5    
58.7    
60.9    
63.0    
65.2    
67.4    
69.6    
71.7    
73.9    
76.1    
78.3    
80.4    
82.6    
84.8    
87.0    
89.1    
91.3    
93.5    
95.7    
97.8    
-found 4 predictions from path traversal
Error with prediction: snap lend_intergenic: 2192, rend_intergenic: 1189  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support