-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_371

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3931, 4242
Sorry, prediction snap_scaffold_371-snap.2-T1 fails validation.
(CTC)	 AG	3931-4242	GT	TGG
(TTG)	 AG	5464-5603	GA	GAG
-recovered snap_scaffold_371-snap.2-T1, terminal, 5464, 5603
-recovered snap_scaffold_371-snap.2-T1, internal, 3931, 4242
Valid prediction for GlimmerHMM_glimmerT_61763-T1
Valid prediction for GlimmerHMM_glimmerT_61762-T1
Couldn't classify 7077, 7174
Sorry, prediction snap_scaffold_371-snap.3-T1 fails validation.
(ATG)	 AC	5652-5754	GT	TGG
(GCC)	 AG	7077-7174	GT	CGG
-recovered snap_scaffold_371-snap.3-T1, initial, 5652, 5754
-recovered snap_scaffold_371-snap.3-T1, internal, 7077, 7174
Valid prediction for GeneMark_model.107452_t
Valid prediction for GeneMark_model.107451_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 537, 565
Sorry, prediction snap_scaffold_371-snap.1-T1 fails validation.
(GTC)	 AG	537-565	GT	GCG
(CGG)	 AG	2034-2176	GT	TTG
(GCA)	 AG	6615-6732	TC	AAT
-recovered snap_scaffold_371-snap.1-T1, terminal, 6615, 6732
-recovered snap_scaffold_371-snap.1-T1, internal, 537, 565
-recovered snap_scaffold_371-snap.1-T1, internal, 2034, 2176
Valid prediction for GeneMark_model.107450_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7115, rend_intergenic: 3931  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7651
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 7115, rend_intergenic: 3931  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support