-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_370

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61761-T1
Valid prediction for Augustus_model.g41050.t1
Couldn't classify 251, 371
Sorry, prediction snap_scaffold_370-snap.1-T1 fails validation.
(GAG)	 AG	251-371	GT	CAG
(AGA)	 AG	602-729	GT	AGG
(GAA)	 AG	858-914	GT	CGG
(GGA)	 AG	3251-3482	GG	GAG
-recovered snap_scaffold_370-snap.1-T1, terminal, 3251, 3482
-recovered snap_scaffold_370-snap.1-T1, internal, 251, 371
-recovered snap_scaffold_370-snap.1-T1, internal, 602, 729
-recovered snap_scaffold_370-snap.1-T1, internal, 858, 914
Valid prediction for snap_scaffold_370-snap.3-T1
Couldn't classify 7543, 7569
Sorry, prediction GeneMark_model.107449_t fails validation.
(ATG)	 CG	3334-3392	GT	CTG
(AGG)	 AG	3424-3528	GT	GGG
(AGG)	 AG	3561-3566	GT	GGG
(AGA)	 AG	3614-3652	GT	ATG
(GAG)	 AG	3732-3743	GT	GGG
(TCT)	 AG	3783-3800	GT	CCG
(CAG)	 AG	3912-3938	GT	GCG
(ACA)	 AG	3960-4169	GT	GAG
(AGA)	 AG	4214-4258	GT	GTG
(ACA)	 AG	4307-4468	GT	GAG
(AGT)	 AG	4811-4888	GT	TGG
(GCA)	 AG	5045-5149	GT	CAG
(AAA)	 AG	5657-5671	GT	GAG
(GAG)	 AG	5695-5712	GT	AGG
(GGA)	 AG	6422-6448	GT	GAG
(TGG)	 AG	6484-6522	GT	GCG
(AAT)	 AG	6679-6712	GT	GAG
(CAC)	 AG	6909-6943	GT	ACG
(AGA)	 AG	6973-6987	GT	ACG
(AGG)	 AG	7021-7053	GT	ACG
(AGA)	 AG	7083-7097	GT	ACG
(AGA)	 AG	7127-7264	GT	GAG
(GAG)	 AG	7285-7293	GT	ACG
(AGA)	 AG	7323-7427	GT	GCG
(AGA)	 AG	7543-7569	GT	GCG
-recovered GeneMark_model.107449_t, initial, 3334, 3392
-recovered GeneMark_model.107449_t, internal, 3424, 3528
-recovered GeneMark_model.107449_t, internal, 3561, 3566
-recovered GeneMark_model.107449_t, internal, 3614, 3652
-recovered GeneMark_model.107449_t, internal, 3732, 3743
-recovered GeneMark_model.107449_t, internal, 3783, 3800
-recovered GeneMark_model.107449_t, internal, 3912, 3938
-recovered GeneMark_model.107449_t, internal, 3960, 4169
-recovered GeneMark_model.107449_t, internal, 4214, 4258
-recovered GeneMark_model.107449_t, internal, 4307, 4468
-recovered GeneMark_model.107449_t, internal, 4811, 4888
-recovered GeneMark_model.107449_t, internal, 5045, 5149
-recovered GeneMark_model.107449_t, internal, 5657, 5671
-recovered GeneMark_model.107449_t, internal, 5695, 5712
-recovered GeneMark_model.107449_t, internal, 6422, 6448
-recovered GeneMark_model.107449_t, internal, 6484, 6522
-recovered GeneMark_model.107449_t, internal, 6679, 6712
-recovered GeneMark_model.107449_t, internal, 6909, 6943
-recovered GeneMark_model.107449_t, internal, 6973, 6987
-recovered GeneMark_model.107449_t, internal, 7021, 7053
-recovered GeneMark_model.107449_t, internal, 7083, 7097
-recovered GeneMark_model.107449_t, internal, 7127, 7264
-recovered GeneMark_model.107449_t, internal, 7285, 7293
-recovered GeneMark_model.107449_t, internal, 7323, 7427
-recovered GeneMark_model.107449_t, internal, 7543, 7569

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4831, 4950
Sorry, prediction snap_scaffold_370-snap.2-T1 fails validation.
(ATG)	 AA	2707-2740	GT	AGG
(CGT)	 AG	4263-4407	GT	TCG
(TGA)	 AG	4831-4950	GT	TTG
-recovered snap_scaffold_370-snap.2-T1, initial, 2707, 2740
-recovered snap_scaffold_370-snap.2-T1, internal, 4263, 4407
-recovered snap_scaffold_370-snap.2-T1, internal, 4831, 4950
Valid prediction for GlimmerHMM_glimmerT_61760-T1
Valid prediction for Augustus_model.g41051.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3482, rend_intergenic: 2703  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7652
-exon list size: 70


building trellis

1.4    
2.8    
4.2    
5.6    
6.9    
8.3    
9.7    
11.1    
12.5    
13.9    
15.3    
16.7    
18.1    
19.4    
20.8    
22.2    
23.6    
25.0    
26.4    
27.8    
29.2    
30.6    
31.9    
33.3    
34.7    
36.1    
37.5    
38.9    
40.3    
41.7    
43.1    
44.4    
45.8    
47.2    
48.6    
50.0    
51.4    
52.8    
54.2    
55.6    
56.9    
58.3    
59.7    
61.1    
62.5    
63.9    
65.3    
66.7    
68.1    
69.4    
70.8    
72.2    
73.6    
75.0    
76.4    
77.8    
79.2    
80.6    
81.9    
83.3    
84.7    
86.1    
87.5    
88.9    
90.3    
91.7    
93.1    
94.4    
95.8    
97.2    
98.6    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 3482, rend_intergenic: 2703  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support