-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_367

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 7445, 7465
Sorry, prediction GeneMark_model.107443_t fails validation.
(ATG)	 AC	6335-6337	GT	TGG
(CCC)	 AG	6837-7006	GT	GGG
(TTG)	 AG	7049-7072	GT	AAG
(AGA)	 AG	7445-7465	GT	GGG
-recovered GeneMark_model.107443_t, initial, 6335, 6337
-recovered GeneMark_model.107443_t, internal, 6837, 7006
-recovered GeneMark_model.107443_t, internal, 7049, 7072
-recovered GeneMark_model.107443_t, internal, 7445, 7465
Valid prediction for GeneMark_model.107441_t
add_exon() Sorry, GeneMark_model.107441_t 2129-2255-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_61757-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61757-T1 6800-7019-terminal-1 is invalid.
Couldn't classify 4184, 4245
Couldn't classify 6837, 6988
Sorry, prediction snap_scaffold_367-snap.2-T1 fails validation.
(GCC)	 AG	4184-4245	GT	GGG
(CCC)	 AG	6837-6988	GT	AGG
-recovered snap_scaffold_367-snap.2-T1, internal, 4184, 4245
-recovered snap_scaffold_367-snap.2-T1, internal, 6837, 6988

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107442_t
Couldn't classify 3431, 3510
Couldn't classify 7310, 7376
Sorry, prediction snap_scaffold_367-snap.1-T1 fails validation.
(AGG)	 AG	3431-3510	GT	AGG
(GGT)	 AG	3718-3760	GT	TGG
(CAT)	 AG	7310-7376	GT	TGG
-recovered snap_scaffold_367-snap.1-T1, internal, 3431, 3510
-recovered snap_scaffold_367-snap.1-T1, internal, 3718, 3760
-recovered snap_scaffold_367-snap.1-T1, internal, 7310, 7376

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4257, rend_intergenic: 4184  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7687
-exon list size: 33


building trellis

2.9    
5.7    
8.6    
11.4    
14.3    
17.1    
20.0    
22.9    
25.7    
28.6    
31.4    
34.3    
37.1    
40.0    
42.9    
45.7    
48.6    
51.4    
54.3    
57.1    
60.0    
62.9    
65.7    
68.6    
71.4    
74.3    
77.1    
80.0    
82.9    
85.7    
88.6    
91.4    
94.3    
97.1    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4257, rend_intergenic: 4184  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support