-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_366 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107437_t Couldn't classify 7299, 7410 Sorry, prediction GeneMark_model.107440_t fails validation. (ATG) CC 5656-5678 GT CAG (GGA) AG 6310-6318 GT TTG (AGA) AG 6343-6351 GT TCG (ATC) AG 6380-6415 GT TCG (AGA) AG 6436-6471 GC TCG (GGG) AG 6496-6504 GC TCG (TCA) AG 6529-6610 GT TGG (GCG) AG 6637-6707 GT CGG (ATG) AG 6778-6876 GT GGG (AGG) AG 6906-6947 GT GGG (GGG) AG 6974-6985 GT GGG (GGG) AG 7007-7021 GT GGG (AAG) AG 7048-7053 GT GGG (GGG) AG 7082-7108 GT GGG (GAG) AG 7137-7145 GT GGG (GAA) AG 7174-7185 GT GGG (GAG) AG 7216-7266 GT GAG (GCT) AG 7299-7410 GT ATG -recovered GeneMark_model.107440_t, initial, 5656, 5678 add_exon() Sorry, GeneMark_model.107440_t 6778-6876-initial-1 is invalid. -recovered GeneMark_model.107440_t, initial, 6778, 6876 -recovered GeneMark_model.107440_t, internal, 6310, 6318 -recovered GeneMark_model.107440_t, internal, 6343, 6351 -recovered GeneMark_model.107440_t, internal, 6380, 6415 -recovered GeneMark_model.107440_t, internal, 6436, 6471 -recovered GeneMark_model.107440_t, internal, 6496, 6504 -recovered GeneMark_model.107440_t, internal, 6529, 6610 -recovered GeneMark_model.107440_t, internal, 6637, 6707 -recovered GeneMark_model.107440_t, internal, 6778, 6876 -recovered GeneMark_model.107440_t, internal, 6906, 6947 -recovered GeneMark_model.107440_t, internal, 6974, 6985 -recovered GeneMark_model.107440_t, internal, 7007, 7021 -recovered GeneMark_model.107440_t, internal, 7048, 7053 -recovered GeneMark_model.107440_t, internal, 7082, 7108 -recovered GeneMark_model.107440_t, internal, 7137, 7145 -recovered GeneMark_model.107440_t, internal, 7174, 7185 -recovered GeneMark_model.107440_t, internal, 7216, 7266 -recovered GeneMark_model.107440_t, internal, 7299, 7410 Couldn't classify 78, 181 Sorry, prediction GeneMark_model.107434_t fails validation. (CTG) AG 78-181 GT AAG (GGA) AG 265-285 GT CAG (AGA) AG 311-349 GT CAG (ATA) AG 428-431 AG AAA -recovered GeneMark_model.107434_t, terminal, 428, 431 -recovered GeneMark_model.107434_t, internal, 78, 181 -recovered GeneMark_model.107434_t, internal, 265, 285 -recovered GeneMark_model.107434_t, internal, 311, 349 Valid prediction for snap_scaffold_366-snap.3-T1 Valid prediction for GeneMark_model.107438_t Couldn't classify 78, 197 Sorry, prediction snap_scaffold_366-snap.2-T1 fails validation. (CTG) AG 78-197 GT TGG (GGC) AG 1998-2065 GT GGG (GGA) AG 2184-2355 GT CAG (AAT) AG 2446-3129 AG GAA -recovered snap_scaffold_366-snap.2-T1, terminal, 2446, 3129 -recovered snap_scaffold_366-snap.2-T1, internal, 78, 197 -recovered snap_scaffold_366-snap.2-T1, internal, 1998, 2065 -recovered snap_scaffold_366-snap.2-T1, internal, 2184, 2355 Valid prediction for GeneMark_model.107436_t -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Couldn't classify 316, 419 Sorry, prediction Augustus_model.g41049.t1 fails validation. (CGG) AG 316-419 GT AGG (CAG) AG 864-1088 GT AGG (TGG) AG 1474-1557 GT CAG (TAA) AG 2630-2822 GT AGG (TGA) AG 5442-5565 CC AGC -recovered Augustus_model.g41049.t1, terminal, 5442, 5565 -recovered Augustus_model.g41049.t1, internal, 316, 419 -recovered Augustus_model.g41049.t1, internal, 864, 1088 -recovered Augustus_model.g41049.t1, internal, 1474, 1557 -recovered Augustus_model.g41049.t1, internal, 2630, 2822 Couldn't classify 316, 419 Sorry, prediction snap_scaffold_366-snap.1-T1 fails validation. (CGG) AG 316-419 GT AGG (CAG) AG 864-1088 GT AGG (TGG) AG 1474-1557 GT CAG (TAA) AG 2630-2822 GT AGG (TGA) AG 5442-5535 GT ACG (TCC) AG 7461-7679 GG GAG -recovered snap_scaffold_366-snap.1-T1, terminal, 7461, 7679 -recovered snap_scaffold_366-snap.1-T1, internal, 316, 419 -recovered snap_scaffold_366-snap.1-T1, internal, 864, 1088 -recovered snap_scaffold_366-snap.1-T1, internal, 1474, 1557 -recovered snap_scaffold_366-snap.1-T1, internal, 2630, 2822 -recovered snap_scaffold_366-snap.1-T1, internal, 5442, 5535 Valid prediction for GeneMark_model.107435_t Couldn't classify 316, 419 Sorry, prediction GlimmerHMM_glimmerT_61756-T1 fails validation. (CGG) AG 316-419 GT AGG (CAG) AG 864-1088 GT AGG (TGG) AG 1474-1557 GT CAG (TAA) AG 2630-2805 GT ACG (GAT) AG 5410-5565 CC AGC -recovered GlimmerHMM_glimmerT_61756-T1, terminal, 5410, 5565 -recovered GlimmerHMM_glimmerT_61756-T1, internal, 316, 419 -recovered GlimmerHMM_glimmerT_61756-T1, internal, 864, 1088 -recovered GlimmerHMM_glimmerT_61756-T1, internal, 1474, 1557 -recovered GlimmerHMM_glimmerT_61756-T1, internal, 2630, 2805 Valid prediction for Augustus_model.g41048.t1 Valid prediction for GeneMark_model.107439_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7392, rend_intergenic: 78 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 7707 -exon list size: 88 building trellis 1.1 2.2 3.3 4.4 5.6 6.7 7.8 8.9 10.0 11.1 12.2 13.3 14.4 15.6 16.7 17.8 18.9 20.0 21.1 22.2 23.3 24.4 25.6 26.7 27.8 28.9 30.0 31.1 32.2 33.3 34.4 35.6 36.7 37.8 38.9 40.0 41.1 42.2 43.3 44.4 45.6 46.7 47.8 48.9 50.0 51.1 52.2 53.3 54.4 55.6 56.7 57.8 58.9 60.0 61.1 62.2 63.3 64.4 65.6 66.7 67.8 68.9 70.0 71.1 72.2 73.3 74.4 75.6 76.7 77.8 78.9 80.0 81.1 82.2 83.3 84.4 85.6 86.7 87.8 88.9 90.0 91.1 92.2 93.3 94.4 95.6 96.7 97.8 98.9 -found 2 predictions from path traversal Error with prediction: snap lend_intergenic: 7392, rend_intergenic: 78 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 2 predictions persist after filtering for low support