-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_365

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61754-T1
Valid prediction for GeneMark_model.107433_t
Couldn't classify 5428, 5630
Sorry, prediction snap_scaffold_365-snap.2-T1 fails validation.
(ATG)	 AA	1832-1979	GT	GGG
(GCA)	 AG	3938-4097	GT	GGG
(ACT)	 AG	4987-4998	GT	TAG
(TCC)	 AG	5125-5238	GT	CAG
(CCT)	 AG	5428-5630	GT	AGG
-recovered snap_scaffold_365-snap.2-T1, initial, 1832, 1979
-recovered snap_scaffold_365-snap.2-T1, internal, 3938, 4097
-recovered snap_scaffold_365-snap.2-T1, internal, 4987, 4998
-recovered snap_scaffold_365-snap.2-T1, internal, 5125, 5238
-recovered snap_scaffold_365-snap.2-T1, internal, 5428, 5630

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61755-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61755-T1 1983-2202-terminal-1 is invalid.
Couldn't classify 7523, 7532
Sorry, prediction GeneMark_model.107432_t fails validation.
(ATG)	 AC	4834-4847	GC	AGG
(ACA)	 AG	4938-5042	GT	GTG
(AGA)	 AG	5191-5256	GT	AGG
(GGA)	 AG	5289-5315	GT	AGG
(GGA)	 AG	5339-5485	GT	GGG
(GAG)	 AG	6575-6637	GT	GAG
(GGG)	 AG	6666-6741	GT	AGG
(GAC)	 AG	6912-6985	GT	AGG
(AGA)	 AG	7367-7459	GT	AAG
(AAC)	 AG	7481-7486	GT	ACG
(GGA)	 AG	7523-7532	GT	GGG
-recovered GeneMark_model.107432_t, initial, 4834, 4847
-recovered GeneMark_model.107432_t, internal, 4938, 5042
-recovered GeneMark_model.107432_t, internal, 5191, 5256
-recovered GeneMark_model.107432_t, internal, 5289, 5315
-recovered GeneMark_model.107432_t, internal, 5339, 5485
-recovered GeneMark_model.107432_t, internal, 6575, 6637
-recovered GeneMark_model.107432_t, internal, 6666, 6741
-recovered GeneMark_model.107432_t, internal, 6912, 6985
-recovered GeneMark_model.107432_t, internal, 7367, 7459
-recovered GeneMark_model.107432_t, internal, 7481, 7486
-recovered GeneMark_model.107432_t, internal, 7523, 7532
Couldn't classify 6912, 6985
Sorry, prediction snap_scaffold_365-snap.1-T1 fails validation.
(ATG)	 GA	2555-2559	GT	GGG
(TCT)	 AG	2737-3116	GT	AAG
(GAC)	 AG	6912-6985	GT	AGG
-recovered snap_scaffold_365-snap.1-T1, initial, 2555, 2559
-recovered snap_scaffold_365-snap.1-T1, internal, 2737, 3116
-recovered snap_scaffold_365-snap.1-T1, internal, 6912, 6985

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5169, rend_intergenic: 1832  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7723
-exon list size: 48


building trellis

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-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 5169, rend_intergenic: 1832  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support