-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_363

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 7652, 7726
Sorry, prediction GeneMark_model.107431_t fails validation.
(ATG)	 GG	6121-6128	GT	TTG
(GGG)	 AG	6991-7062	GT	AGG
(GGG)	 AG	7109-7189	GT	AGG
(GGA)	 AG	7215-7349	GT	GGG
(GTG)	 AG	7652-7726	GC	CCG
-recovered GeneMark_model.107431_t, initial, 6121, 6128
-recovered GeneMark_model.107431_t, internal, 6991, 7062
-recovered GeneMark_model.107431_t, internal, 7109, 7189
-recovered GeneMark_model.107431_t, internal, 7215, 7349
-recovered GeneMark_model.107431_t, internal, 7652, 7726
Couldn't classify 3379, 3448
Couldn't classify 7652, 7731
Sorry, prediction snap_scaffold_363-snap.2-T1 fails validation.
(CCT)	 AG	3379-3448	GT	GCG
(ATA)	 AG	6940-7062	GT	AGG
(GTG)	 AG	7652-7731	GT	AGG
-recovered snap_scaffold_363-snap.2-T1, internal, 3379, 3448
-recovered snap_scaffold_363-snap.2-T1, internal, 6940, 7062
-recovered snap_scaffold_363-snap.2-T1, internal, 7652, 7731

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107430_t
Couldn't classify 7515, 7705
Sorry, prediction snap_scaffold_363-snap.1-T1 fails validation.
(ATG)	 AG	103-130	GT	CAG
(GAC)	 AG	4338-4404	GT	GGG
(GTC)	 AG	7515-7705	GT	AGG
-recovered snap_scaffold_363-snap.1-T1, initial, 103, 130
-recovered snap_scaffold_363-snap.1-T1, internal, 103, 130
-recovered snap_scaffold_363-snap.1-T1, internal, 4338, 4404
-recovered snap_scaffold_363-snap.1-T1, internal, 7515, 7705
Couldn't classify 7654, 7705
Sorry, prediction GeneMark_model.107429_t fails validation.
(ATG)	 AG	7546-7632	GT	CAG
(GGT)	 AG	7654-7705	GT	AGG
-recovered GeneMark_model.107429_t, initial, 7546, 7632
-recovered GeneMark_model.107429_t, internal, 7546, 7632
-recovered GeneMark_model.107429_t, internal, 7654, 7705

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7642, rend_intergenic: 3379  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7744
-exon list size: 32


building trellis

2.9    
5.9    
8.8    
11.8    
14.7    
17.6    
20.6    
23.5    
26.5    
29.4    
32.4    
35.3    
38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
64.7    
67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
88.2    
91.2    
94.1    
97.1    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 7642, rend_intergenic: 3379  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support