-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_362

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61753-T1
Couldn't classify 343, 431
Couldn't classify 6455, 6724
Sorry, prediction snap_scaffold_362-snap.1-T1 fails validation.
(GGG)	 AG	343-431	GT	AGG
(CCC)	 AG	1458-1952	GT	CGG
(GTG)	 AG	2704-2992	GT	TGG
(GGT)	 AG	2998-3189	GT	AGG
(GTG)	 AG	3213-3308	GT	AGG
(GTG)	 AG	3319-3423	GT	TGG
(GTG)	 AG	3471-3698	GT	AGG
(GTG)	 AG	3733-3837	GT	AGG
(CAC)	 AG	6455-6724	GT	GGG
-recovered snap_scaffold_362-snap.1-T1, internal, 343, 431
-recovered snap_scaffold_362-snap.1-T1, internal, 1458, 1952
-recovered snap_scaffold_362-snap.1-T1, internal, 2704, 2992
-recovered snap_scaffold_362-snap.1-T1, internal, 2998, 3189
-recovered snap_scaffold_362-snap.1-T1, internal, 3213, 3308
-recovered snap_scaffold_362-snap.1-T1, internal, 3319, 3423
-recovered snap_scaffold_362-snap.1-T1, internal, 3471, 3698
-recovered snap_scaffold_362-snap.1-T1, internal, 3733, 3837
-recovered snap_scaffold_362-snap.1-T1, internal, 6455, 6724
Sorry, intron length (4) is less than minimum required (10)
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for GeneMark_model.107425_t
Couldn't classify 257, 268
Sorry, prediction GeneMark_model.107423_t fails validation.
(AGA)	 AG	257-268	GT	GAG
(CAT)	 AG	306-324	GT	TGG
(GAG)	 AG	354-400	GT	AGG
(GAG)	 AG	427-462	GT	AGG
(GAG)	 AG	489-536	GT	GGG
(GAG)	 AG	559-594	GT	GGG
(GGA)	 AG	633-653	GT	GAG
(ACT)	 AG	775-864	GT	AGG
(GAG)	 AG	904-909	GT	TCG
(GAG)	 AG	939-944	GT	TCG
(GAT)	 AG	967-1018	GA	AGG
-recovered GeneMark_model.107423_t, terminal, 633, 653
-recovered GeneMark_model.107423_t, terminal, 967, 1018
-recovered GeneMark_model.107423_t, internal, 257, 268
-recovered GeneMark_model.107423_t, internal, 306, 324
-recovered GeneMark_model.107423_t, internal, 354, 400
-recovered GeneMark_model.107423_t, internal, 427, 462
-recovered GeneMark_model.107423_t, internal, 489, 536
-recovered GeneMark_model.107423_t, internal, 559, 594
-recovered GeneMark_model.107423_t, internal, 633, 653
-recovered GeneMark_model.107423_t, internal, 775, 864
-recovered GeneMark_model.107423_t, internal, 904, 909
-recovered GeneMark_model.107423_t, internal, 939, 944
Couldn't classify 7718, 7735
Sorry, prediction GeneMark_model.107428_t fails validation.
(ATG)	 GA	6549-6562	GT	TGG
(GGG)	 AG	6589-6726	GT	GTG
(AGG)	 AG	6765-6848	GT	GTG
(AGG)	 AG	7056-7073	GT	AAG
(AGA)	 AG	7718-7735	GC	AGG
-recovered GeneMark_model.107428_t, initial, 6549, 6562
-recovered GeneMark_model.107428_t, internal, 6589, 6726
-recovered GeneMark_model.107428_t, internal, 6765, 6848
-recovered GeneMark_model.107428_t, internal, 7056, 7073
-recovered GeneMark_model.107428_t, internal, 7718, 7735
Valid prediction for GlimmerHMM_glimmerT_61752-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61752-T1 1239-1420-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107426_t
Valid prediction for GeneMark_model.107424_t
Couldn't classify 6249, 6435
Sorry, prediction snap_scaffold_362-snap.2-T1 fails validation.
(ATG)	 AG	1831-1888	GT	AGG
(GAC)	 AG	5835-5997	GT	GAG
(GGG)	 AG	6016-6149	GT	GGG
(AGC)	 AG	6249-6435	GT	GGG
-recovered snap_scaffold_362-snap.2-T1, initial, 1831, 1888
-recovered snap_scaffold_362-snap.2-T1, internal, 1831, 1888
-recovered snap_scaffold_362-snap.2-T1, internal, 5835, 5997
-recovered snap_scaffold_362-snap.2-T1, internal, 6016, 6149
-recovered snap_scaffold_362-snap.2-T1, internal, 6249, 6435
Valid prediction for GeneMark_model.107427_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6724, rend_intergenic: 1313  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7747
-exon list size: 78


building trellis

1.2    
2.5    
3.8    
5.0    
6.2    
7.5    
8.8    
10.0    
11.2    
12.5    
13.8    
15.0    
16.2    
17.5    
18.8    
20.0    
21.2    
22.5    
23.8    
25.0    
26.2    
27.5    
28.7    
30.0    
31.2    
32.5    
33.8    
35.0    
36.2    
37.5    
38.8    
40.0    
41.2    
42.5    
43.8    
45.0    
46.2    
47.5    
48.8    
50.0    
51.2    
52.5    
53.8    
55.0    
56.2    
57.5    
58.8    
60.0    
61.3    
62.5    
63.7    
65.0    
66.2    
67.5    
68.8    
70.0    
71.2    
72.5    
73.8    
75.0    
76.2    
77.5    
78.8    
80.0    
81.2    
82.5    
83.8    
85.0    
86.2    
87.5    
88.8    
90.0    
91.2    
92.5    
93.8    
95.0    
96.2    
97.5    
98.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 6724, rend_intergenic: 1313  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support