-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_361

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 269, 359
Sorry, prediction snap_scaffold_361-snap.1-T1 fails validation.
(CCG)	 AG	269-359	GT	AGG
(AAG)	 AG	2554-2753	GT	TGG
(TTC)	 AG	3288-3441	AA	GAA
-recovered snap_scaffold_361-snap.1-T1, terminal, 3288, 3441
-recovered snap_scaffold_361-snap.1-T1, internal, 269, 359
-recovered snap_scaffold_361-snap.1-T1, internal, 2554, 2753
Valid prediction for GeneMark_model.107422_t
Valid prediction for GeneMark_model.107420_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 5780, 5935
Sorry, prediction snap_scaffold_361-snap.2-T1 fails validation.
(AGT)	 AG	5780-5935	GT	AGG
(GAG)	 AG	6849-6969	GT	AAG
-recovered snap_scaffold_361-snap.2-T1, terminal, 6849, 6969
-recovered snap_scaffold_361-snap.2-T1, internal, 5780, 5935
-recovered snap_scaffold_361-snap.2-T1, internal, 6849, 6969
Valid prediction for GeneMark_model.107421_t
Couldn't classify 7112, 7150
Sorry, prediction GeneMark_model.107419_t fails validation.
(ATG)	 GG	6876-6925	GT	GGG
(GAG)	 AG	6947-6952	GT	AGG
(AGA)	 AG	6994-7035	GT	GAG
(AAG)	 AG	7057-7086	GT	AGG
(AAG)	 AG	7112-7150	GT	GGG
-recovered GeneMark_model.107419_t, initial, 6876, 6925
-recovered GeneMark_model.107419_t, internal, 6947, 6952
-recovered GeneMark_model.107419_t, internal, 6994, 7035
-recovered GeneMark_model.107419_t, internal, 7057, 7086
-recovered GeneMark_model.107419_t, internal, 7112, 7150

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3441, rend_intergenic: 785  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7753
-exon list size: 32


building trellis

2.9    
5.9    
8.8    
11.8    
14.7    
17.6    
20.6    
23.5    
26.5    
29.4    
32.4    
35.3    
38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
64.7    
67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
88.2    
91.2    
94.1    
97.1    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3441, rend_intergenic: 785  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support