-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_360

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 848, 874
Sorry, prediction GeneMark_model.107416_t fails validation.
(GCA)	 AG	848-874	GT	AGG
(GTG)	 AG	898-930	GT	AGG
(ACC)	 AG	961-1020	GT	AGG
(GTG)	 AG	1044-1160	GT	GGG
(ACC)	 AG	1187-1228	GT	GGG
(GCC)	 AG	1257-1281	TG	AGT
-recovered GeneMark_model.107416_t, terminal, 1257, 1281
-recovered GeneMark_model.107416_t, internal, 848, 874
-recovered GeneMark_model.107416_t, internal, 898, 930
-recovered GeneMark_model.107416_t, internal, 961, 1020
-recovered GeneMark_model.107416_t, internal, 1044, 1160
-recovered GeneMark_model.107416_t, internal, 1187, 1228
Couldn't classify 7614, 7735
Sorry, prediction snap_scaffold_360-snap.2-T1 fails validation.
(ATG)	 CC	7146-7248	GT	AGG
(CTG)	 AG	7614-7735	GT	AGG
-recovered snap_scaffold_360-snap.2-T1, initial, 7146, 7248
-recovered snap_scaffold_360-snap.2-T1, internal, 7614, 7735
Couldn't classify 797, 1160
Sorry, prediction snap_scaffold_360-snap.1-T1 fails validation.
(GGC)	 AG	797-1160	GT	GGG
(AGC)	 AG	6616-6728	GT	CAG
(AGA)	 AG	6915-7008	AG	AGA
-recovered snap_scaffold_360-snap.1-T1, terminal, 6915, 7008
-recovered snap_scaffold_360-snap.1-T1, internal, 797, 1160
-recovered snap_scaffold_360-snap.1-T1, internal, 6616, 6728
Valid prediction for Augustus_model.g41047.t1
Couldn't classify 7558, 7702
Sorry, prediction GeneMark_model.107418_t fails validation.
(ATG)	 AG	6919-6975	GT	GGG
(CCA)	 AG	7144-7517	GT	GAG
(GAA)	 AG	7558-7702	GT	GAG
-recovered GeneMark_model.107418_t, initial, 6919, 6975
-recovered GeneMark_model.107418_t, internal, 6919, 6975
-recovered GeneMark_model.107418_t, internal, 7144, 7517
-recovered GeneMark_model.107418_t, internal, 7558, 7702

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107417_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7755
-exon list size: 37


building trellis

2.6    
5.1    
7.7    
10.3    
12.8    
15.4    
17.9    
20.5    
23.1    
25.6    
28.2    
30.8    
33.3    
35.9    
38.5    
41.0    
43.6    
46.2    
48.7    
51.3    
53.8    
56.4    
59.0    
61.5    
64.1    
66.7    
69.2    
71.8    
74.4    
76.9    
79.5    
82.1    
84.6    
87.2    
89.7    
92.3    
94.9    
97.4    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support