-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_36

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1309, 1390
Sorry, prediction snap_scaffold_36-snap.1-T1 fails validation.
(CGC)	 AG	1309-1390	GT	CTG
(CCG)	 AG	2650-2847	GT	GGG
(GGC)	 AG	2957-3041	GT	AAG
(TAC)	 AG	4457-4572	TG	AAT
-recovered snap_scaffold_36-snap.1-T1, terminal, 2957, 3041
-recovered snap_scaffold_36-snap.1-T1, terminal, 4457, 4572
-recovered snap_scaffold_36-snap.1-T1, internal, 1309, 1390
-recovered snap_scaffold_36-snap.1-T1, internal, 2650, 2847
-recovered snap_scaffold_36-snap.1-T1, internal, 2957, 3041
Valid prediction for GeneMark_model.106187_t
Valid prediction for GeneMark_model.106182_t
Valid prediction for Augustus_model.g40569.t1
Valid prediction for snap_scaffold_36-snap.4-T1
Valid prediction for snap_scaffold_36-snap.8-T1
Valid prediction for GeneMark_model.106184_t
Valid prediction for Augustus_model.g40570.t1
Valid prediction for snap_scaffold_36-snap.7-T1
Valid prediction for snap_scaffold_36-snap.3-T1
Valid prediction for GlimmerHMM_glimmerT_60989-T1
Valid prediction for GlimmerHMM_glimmerT_60984-T1
Valid prediction for GeneMark_model.106186_t
Couldn't classify 1347, 1410
Sorry, prediction GeneMark_model.106178_t fails validation.
(GCC)	 AG	1347-1410	GT	GGG
(GAC)	 AG	1432-1867	GT	CCG
(GAT)	 AG	1961-1974	GT	ACG
(AGT)	 AG	2021-2044	GT	GAG
(AGG)	 AG	2071-2082	GT	GGG
(GAC)	 AG	2118-2141	GT	ATG
(AGA)	 AG	2176-2187	GT	GGG
(GAG)	 AG	2208-2241	AG	GAA
-recovered GeneMark_model.106178_t, terminal, 2208, 2241
-recovered GeneMark_model.106178_t, internal, 1347, 1410
-recovered GeneMark_model.106178_t, internal, 1432, 1867
-recovered GeneMark_model.106178_t, internal, 1961, 1974
-recovered GeneMark_model.106178_t, internal, 2021, 2044
-recovered GeneMark_model.106178_t, internal, 2071, 2082
-recovered GeneMark_model.106178_t, internal, 2118, 2141
-recovered GeneMark_model.106178_t, internal, 2176, 2187
Valid prediction for GlimmerHMM_glimmerT_60988-T1
Valid prediction for GeneMark_model.106180_t
Valid prediction for GlimmerHMM_glimmerT_60985-T1
Valid prediction for GeneMark_model.106183_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g40568.t1
Couldn't classify 36785, 37111
Sorry, prediction snap_scaffold_36-snap.2-T1 fails validation.
(ATG)	 TC	33445-33456	GT	AGG
(ATA)	 AG	34220-34369	GT	ATG
(TGG)	 AG	35596-35618	GT	AGG
(CCC)	 AG	35757-35910	GT	CTG
(GGG)	 AG	36785-37111	GT	GGG
-recovered snap_scaffold_36-snap.2-T1, initial, 33445, 33456
-recovered snap_scaffold_36-snap.2-T1, internal, 34220, 34369
-recovered snap_scaffold_36-snap.2-T1, internal, 35596, 35618
-recovered snap_scaffold_36-snap.2-T1, internal, 35757, 35910
-recovered snap_scaffold_36-snap.2-T1, internal, 36785, 37111
Valid prediction for GlimmerHMM_glimmerT_60987-T1
Couldn't classify 376, 639
Sorry, prediction snap_scaffold_36-snap.6-T1 fails validation.
(TGT)	 AG	376-639	GT	CAG
(GGG)	 AG	1193-1543	GT	GGG
(CCT)	 AG	12352-12416	GT	GGG
(ATC)	 AG	12579-12658	GT	GGG
(AGG)	 AG	12722-12893	GT	AGG
(GTC)	 AG	16508-16780	CA	AGC
-recovered snap_scaffold_36-snap.6-T1, terminal, 16508, 16780
-recovered snap_scaffold_36-snap.6-T1, internal, 376, 639
-recovered snap_scaffold_36-snap.6-T1, internal, 1193, 1543
-recovered snap_scaffold_36-snap.6-T1, internal, 12352, 12416
-recovered snap_scaffold_36-snap.6-T1, internal, 12579, 12658
-recovered snap_scaffold_36-snap.6-T1, internal, 12722, 12893
Valid prediction for GlimmerHMM_glimmerT_60986-T1
Valid prediction for GeneMark_model.106185_t
Valid prediction for GeneMark_model.106179_t
Valid prediction for GlimmerHMM_glimmerT_60983-T1
Valid prediction for snap_scaffold_36-snap.5-T1
Valid prediction for GeneMark_model.106181_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4572, rend_intergenic: 1488  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38223, rend_intergenic: 22579  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 38598
-exon list size: 148


building trellis

0.7    
1.3    
2.0    
2.7    
3.3    
4.0    
4.7    
5.3    
6.0    
6.7    
7.3    
8.0    
8.7    
9.3    
10.0    
10.7    
11.3    
12.0    
12.7    
13.3    
14.0    
14.7    
15.3    
16.0    
16.7    
17.3    
18.0    
18.7    
19.3    
20.0    
20.7    
21.3    
22.0    
22.7    
23.3    
24.0    
24.7    
25.3    
26.0    
26.7    
27.3    
28.0    
28.7    
29.3    
30.0    
30.7    
31.3    
32.0    
32.7    
33.3    
34.0    
34.7    
35.3    
36.0    
36.7    
37.3    
38.0    
38.7    
39.3    
40.0    
40.7    
41.3    
42.0    
42.7    
43.3    
44.0    
44.7    
45.3    
46.0    
46.7    
47.3    
48.0    
48.7    
49.3    
50.0    
50.7    
51.3    
52.0    
52.7    
53.3    
54.0    
54.7    
55.3    
56.0    
56.7    
57.3    
58.0    
58.7    
59.3    
60.0    
60.7    
61.3    
62.0    
62.7    
63.3    
64.0    
64.7    
65.3    
66.0    
66.7    
67.3    
68.0    
68.7    
69.3    
70.0    
70.7    
71.3    
72.0    
72.7    
73.3    
74.0    
74.7    
75.3    
76.0    
76.7    
77.3    
78.0    
78.7    
79.3    
80.0    
80.7    
81.3    
82.0    
82.7    
83.3    
84.0    
84.7    
85.3    
86.0    
86.7    
87.3    
88.0    
88.7    
89.3    
90.0    
90.7    
91.3    
92.0    
92.7    
93.3    
94.0    
94.7    
95.3    
96.0    
96.7    
97.3    
98.0    
98.7    
99.3    
-found 6 predictions from path traversal
Error with prediction: snap lend_intergenic: 4572, rend_intergenic: 1488  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38223, rend_intergenic: 22579  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support