-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_359

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107412_t
add_exon() Sorry, GeneMark_model.107412_t 295-1616-terminal-1 is invalid.
Valid prediction for GeneMark_model.107414_t
Valid prediction for Augustus_model.g41046.t1
add_exon() Sorry, Augustus_model.g41046.t1 295-1616-terminal-1 is invalid.
Couldn't classify 294, 1616
Sorry, prediction pasa_asmbl_40999.p1 fails validation.
(GGC)	 CA	294-1616	AC	GAA
Valid prediction for GlimmerHMM_glimmerT_61750-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61750-T1 295-1616-terminal-1 is invalid.
Valid prediction for snap_scaffold_359-snap.1-T1
add_exon() Sorry, snap_scaffold_359-snap.1-T1 295-1616-terminal-1 is invalid.
Valid prediction for snap_scaffold_359-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 220, 307
Sorry, prediction GeneMark_model.107415_t fails validation.
(CCG)	 AG	220-307	GT	GGG
(CGA)	 AG	401-443	CG	GAC
-recovered GeneMark_model.107415_t, terminal, 401, 443
-recovered GeneMark_model.107415_t, internal, 220, 307
Valid prediction for GlimmerHMM_glimmerT_61751-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7781
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support