-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3572

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 397, 657
Couldn't classify 969, 986
Sorry, prediction GeneMark_model.111114_t fails validation.
(AGG)	 AG	397-657	GT	GGG
(GGA)	 AG	876-902	GT	GAG
(GGA)	 AG	927-944	GT	AGG
(AGA)	 AG	969-986	GC	GAG
-recovered GeneMark_model.111114_t, internal, 397, 657
-recovered GeneMark_model.111114_t, internal, 876, 902
-recovered GeneMark_model.111114_t, internal, 927, 944
-recovered GeneMark_model.111114_t, internal, 969, 986

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_63392-T1
Couldn't classify 449, 646
Sorry, prediction Augustus_model.g42386.t1 fails validation.
(ATC)	 AG	449-646	GT	AGG
-recovered Augustus_model.g42386.t1, internal, 449, 646
Couldn't classify 449, 646
Sorry, prediction snap_scaffold_3572-snap.1-T1 fails validation.
(ATC)	 AG	449-646	GT	AGG
-recovered snap_scaffold_3572-snap.1-T1, internal, 449, 646

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1000
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support