-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_357

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g41044.t1
Couldn't classify 6839, 6918
Sorry, prediction GeneMark_model.107405_t fails validation.
(ATG)	 AT	4677-4750	GT	GAG
(ACC)	 AG	4843-5228	GT	AGG
(GCA)	 AG	6839-6918	GT	CTG
-recovered GeneMark_model.107405_t, initial, 4677, 4750
-recovered GeneMark_model.107405_t, internal, 4843, 5228
-recovered GeneMark_model.107405_t, internal, 6839, 6918
Valid prediction for GlimmerHMM_glimmerT_61747-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61747-T1 3753-4278-terminal-1 is invalid.
Valid prediction for snap_scaffold_357-snap.2-T1
Couldn't classify 6839, 6942
Sorry, prediction GlimmerHMM_glimmerT_61748-T1 fails validation.
(ATG)	 CT	4904-5171	GT	TGG
(GCA)	 AG	6839-6942	GT	AGG
-recovered GlimmerHMM_glimmerT_61748-T1, initial, 4904, 5171
-recovered GlimmerHMM_glimmerT_61748-T1, internal, 6839, 6942

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 7458, 7791
Sorry, prediction Augustus_model.g41043.t1 fails validation.
(ATG)	 AA	6078-6186	GT	TGG
(GTG)	 AG	7458-7791		GA
-recovered Augustus_model.g41043.t1, initial, 6078, 6186
Couldn't classify 7379, 7777
Sorry, prediction snap_scaffold_357-snap.1-T1 fails validation.
(ATG)	 AT	7152-7163	GT	CTG
(ATT)	 AG	7379-7777	GT	GGG
-recovered snap_scaffold_357-snap.1-T1, initial, 7152, 7163
-recovered snap_scaffold_357-snap.1-T1, internal, 7379, 7777
Couldn't classify 7409, 7779
Sorry, prediction GeneMark_model.107404_t fails validation.
(ATG)	 TG	6100-6117	GT	AGG
(TCA)	 AG	7409-7779	GC	GTG
-recovered GeneMark_model.107404_t, initial, 6100, 6117
-recovered GeneMark_model.107404_t, internal, 7409, 7779

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7791
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support