-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3564

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g42385.t1
Couldn't classify 31, 169
Couldn't classify 746, 845
Sorry, prediction GeneMark_model.111111_t fails validation.
(ACC)	 AG	31-169	GT	GAG
(AGA)	 AG	197-211	GT	GAG
(AGA)	 AG	235-243	GT	GAG
(AGA)	 AG	267-287	GT	GAG
(TGA)	 AG	311-325	GT	GAG
(AGT)	 AG	351-357	GT	GAG
(AGC)	 AG	746-845	GT	AGG
-recovered GeneMark_model.111111_t, internal, 31, 169
-recovered GeneMark_model.111111_t, internal, 197, 211
-recovered GeneMark_model.111111_t, internal, 235, 243
-recovered GeneMark_model.111111_t, internal, 267, 287
-recovered GeneMark_model.111111_t, internal, 311, 325
-recovered GeneMark_model.111111_t, internal, 351, 357
-recovered GeneMark_model.111111_t, internal, 746, 845

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1000
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support