-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3561

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_3561-snap.1-T1
Couldn't classify 312, 508
Sorry, prediction Augustus_model.g42384.t1 fails validation.
(GTG)	 AG	312-508	GT	AGG
-recovered Augustus_model.g42384.t1, internal, 312, 508
Couldn't classify 312, 508
Sorry, prediction GeneMark_model.111109_t fails validation.
(GTG)	 AG	312-508	GT	AGG
-recovered GeneMark_model.111109_t, internal, 312, 508
Valid prediction for GlimmerHMM_glimmerT_63389-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1000
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support