-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3560

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 652, 915
Sorry, prediction Augustus_model.g42383.t1 fails validation.
(ACA)	 AG	652-915	GT	GCG
-recovered Augustus_model.g42383.t1, internal, 652, 915
Couldn't classify 272, 570
Couldn't classify 652, 915
Sorry, prediction snap_scaffold_3560-snap.1-T1 fails validation.
(ACA)	 AG	272-570	GT	CAG
(ACA)	 AG	652-915	GT	GCG
-recovered snap_scaffold_3560-snap.1-T1, internal, 272, 570
-recovered snap_scaffold_3560-snap.1-T1, internal, 652, 915
Couldn't classify 32, 41
Couldn't classify 652, 915
Sorry, prediction GeneMark_model.111108_t fails validation.
(CAC)	 AG	32-41	GT	AGG
(TTT)	 AG	381-570	GT	CAG
(ACA)	 AG	652-915	GT	GCG
-recovered GeneMark_model.111108_t, internal, 32, 41
-recovered GeneMark_model.111108_t, internal, 381, 570
-recovered GeneMark_model.111108_t, internal, 652, 915

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1000
-exon list size: 8


building trellis

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50.0    
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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support