-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3555

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 236, 286
Sorry, prediction GeneMark_model.111105_t fails validation.
(GAG)	 AG	236-286	GT	GAG
(AGA)	 AG	310-354	GT	GAG
(GGG)	 AG	378-389	GT	GAG
(GAG)	 AG	555-572	GT	GAG
(GAG)	 AG	601-609	GT	GAG
(GAG)	 AG	630-660	GG	GAG
-recovered GeneMark_model.111105_t, terminal, 630, 660
-recovered GeneMark_model.111105_t, internal, 236, 286
-recovered GeneMark_model.111105_t, internal, 310, 354
-recovered GeneMark_model.111105_t, internal, 378, 389
-recovered GeneMark_model.111105_t, internal, 555, 572
-recovered GeneMark_model.111105_t, internal, 601, 609
add_exon() Sorry, snap_scaffold_3555-snap.1-T1 172-496-single-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1000
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support