-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3549

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 415, 606
Couldn't classify 882, 1001
Sorry, prediction Augustus_model.g42379.t1 fails validation.
(GTG)	 AG	415-606	GT	AGG
(TGG)	 AG	882-1001		CA
-recovered Augustus_model.g42379.t1, internal, 415, 606
Couldn't classify 9, 219
Couldn't classify 882, 991
Sorry, prediction GeneMark_model.111102_t fails validation.
(GAA)	 AG	9-219	GT	ATG
(GTG)	 AG	415-606	GT	AGG
(TGG)	 AG	882-991	GC	AAG
-recovered GeneMark_model.111102_t, internal, 9, 219
-recovered GeneMark_model.111102_t, internal, 415, 606
-recovered GeneMark_model.111102_t, internal, 882, 991
Couldn't classify 415, 606
Couldn't classify 882, 965
Sorry, prediction snap_scaffold_3549-snap.1-T1 fails validation.
(GTG)	 AG	415-606	GT	AGG
(TGG)	 AG	882-965	GT	AGG
-recovered snap_scaffold_3549-snap.1-T1, internal, 415, 606
-recovered snap_scaffold_3549-snap.1-T1, internal, 882, 965

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1001
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support