-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3548

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 22, 186
Couldn't classify 474, 494
Sorry, prediction GeneMark_model.111101_t fails validation.
(GGT)	 AG	22-186	GT	AGG
(AGG)	 AG	220-267	GT	CTG
(AGA)	 AG	300-332	GT	GAG
(AGT)	 AG	364-372	GC	GTG
(GGT)	 AG	398-418	GT	GTG
(AGT)	 AG	440-448	GT	GTG
(AGA)	 AG	474-494	GT	GAG
-recovered GeneMark_model.111101_t, internal, 22, 186
-recovered GeneMark_model.111101_t, internal, 220, 267
-recovered GeneMark_model.111101_t, internal, 300, 332
-recovered GeneMark_model.111101_t, internal, 364, 372
-recovered GeneMark_model.111101_t, internal, 398, 418
-recovered GeneMark_model.111101_t, internal, 440, 448
-recovered GeneMark_model.111101_t, internal, 474, 494

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1001
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support