-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3547

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 59, 175
Couldn't classify 824, 947
Sorry, prediction GeneMark_model.111100_t fails validation.
(GAC)	 AG	59-175	GT	CTG
(AGG)	 AG	786-800	GT	GAG
(GAA)	 AG	824-947	GC	AGG
-recovered GeneMark_model.111100_t, internal, 59, 175
-recovered GeneMark_model.111100_t, internal, 786, 800
-recovered GeneMark_model.111100_t, internal, 824, 947

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_63385-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63385-T1 807-958-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1001
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support