-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3546

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 33, 122
Couldn't classify 952, 964
Sorry, prediction GeneMark_model.111099_t fails validation.
(AGA)	 AG	33-122	GT	GAG
(GGG)	 AG	493-540	GT	AGG
(GGA)	 AG	570-602	GT	GGG
(AGA)	 AG	625-768	GT	GTG
(GGA)	 AG	877-930	GT	GGG
(GAG)	 AG	952-964	GT	GGG
-recovered GeneMark_model.111099_t, internal, 33, 122
-recovered GeneMark_model.111099_t, internal, 493, 540
-recovered GeneMark_model.111099_t, internal, 570, 602
-recovered GeneMark_model.111099_t, internal, 625, 768
-recovered GeneMark_model.111099_t, internal, 877, 930
-recovered GeneMark_model.111099_t, internal, 952, 964

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1001
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support