-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3545

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 47, 58
Couldn't classify 769, 793
Sorry, prediction GeneMark_model.111098_t fails validation.
(GGG)	 AG	47-58	GT	AGG
(AGT)	 AG	85-93	GT	GCG
(AAG)	 AG	318-437	GT	GGG
(AGA)	 AG	464-472	GT	GAG
(AGA)	 AG	506-520	GC	GAG
(GGA)	 AG	542-580	GT	GAG
(TAT)	 AG	608-628	GT	AAG
(GAG)	 AG	662-667	GT	AAG
(AGT)	 AG	689-697	GT	GTG
(TGT)	 AG	719-739	GT	GAG
(AGT)	 AG	769-793	GT	TAG
-recovered GeneMark_model.111098_t, internal, 47, 58
-recovered GeneMark_model.111098_t, internal, 85, 93
-recovered GeneMark_model.111098_t, internal, 318, 437
-recovered GeneMark_model.111098_t, internal, 464, 472
-recovered GeneMark_model.111098_t, internal, 506, 520
-recovered GeneMark_model.111098_t, internal, 542, 580
-recovered GeneMark_model.111098_t, internal, 608, 628
-recovered GeneMark_model.111098_t, internal, 662, 667
-recovered GeneMark_model.111098_t, internal, 689, 697
-recovered GeneMark_model.111098_t, internal, 719, 739
-recovered GeneMark_model.111098_t, internal, 769, 793

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1001
-exon list size: 30


building trellis

3.1    
6.2    
9.4    
12.5    
15.6    
18.8    
21.9    
25.0    
28.1    
31.2    
34.4    
37.5    
40.6    
43.8    
46.9    
50.0    
53.1    
56.2    
59.4    
62.5    
65.6    
68.8    
71.9    
75.0    
78.1    
81.2    
84.4    
87.5    
90.6    
93.8    
96.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support