-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3542

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 512, 679
Sorry, prediction Augustus_model.g42377.t1 fails validation.
(GTT)	 AG	512-679	GT	AGG
-recovered Augustus_model.g42377.t1, internal, 512, 679
Valid prediction for GlimmerHMM_glimmerT_63384-T1
Couldn't classify 512, 679
Couldn't classify 871, 967
Sorry, prediction snap_scaffold_3542-snap.1-T1 fails validation.
(GTT)	 AG	512-679	GT	AGG
(GGC)	 AG	789-843	GT	GGG
(GGC)	 AG	871-967	GT	GGG
-recovered snap_scaffold_3542-snap.1-T1, internal, 512, 679
-recovered snap_scaffold_3542-snap.1-T1, internal, 789, 843
-recovered snap_scaffold_3542-snap.1-T1, internal, 871, 967

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 56, 326
Couldn't classify 967, 978
Sorry, prediction GeneMark_model.111095_t fails validation.
(AAC)	 AG	56-326	GT	TCG
(GGA)	 AG	520-600	GT	AGG
(AGA)	 AG	661-684	GT	AGG
(AGA)	 AG	707-718	GT	TGG
(TGG)	 AG	751-774	GT	AGG
(AGA)	 AG	797-805	GT	GCG
(TGG)	 AG	835-846	GC	AGG
(AGA)	 AG	875-880	GT	AGG
(TGG)	 AG	919-930	GT	AGG
(TGG)	 AG	967-978	GT	AGG
-recovered GeneMark_model.111095_t, terminal, 520, 600
-recovered GeneMark_model.111095_t, internal, 56, 326
-recovered GeneMark_model.111095_t, internal, 520, 600
-recovered GeneMark_model.111095_t, internal, 661, 684
-recovered GeneMark_model.111095_t, internal, 707, 718
-recovered GeneMark_model.111095_t, internal, 751, 774
-recovered GeneMark_model.111095_t, internal, 797, 805
-recovered GeneMark_model.111095_t, internal, 835, 846
-recovered GeneMark_model.111095_t, internal, 875, 880
-recovered GeneMark_model.111095_t, internal, 919, 930
-recovered GeneMark_model.111095_t, internal, 967, 978

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1002
-exon list size: 33


building trellis

2.9    
5.7    
8.6    
11.4    
14.3    
17.1    
20.0    
22.9    
25.7    
28.6    
31.4    
34.3    
37.1    
40.0    
42.9    
45.7    
48.6    
51.4    
54.3    
57.1    
60.0    
62.9    
65.7    
68.6    
71.4    
74.3    
77.1    
80.0    
82.9    
85.7    
88.6    
91.4    
94.3    
97.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support