-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3540

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g42376.t1
Couldn't classify 82, 96
Couldn't classify 216, 306
Sorry, prediction GeneMark_model.111094_t fails validation.
(GAT)	 AG	82-96	GT	GGG
(AAT)	 AG	120-194	GT	GCG
(GAC)	 AG	216-306	GT	AGG
-recovered GeneMark_model.111094_t, internal, 82, 96
-recovered GeneMark_model.111094_t, internal, 120, 194
-recovered GeneMark_model.111094_t, internal, 216, 306

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1002
-exon list size: 8


building trellis

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-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support