-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3539

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 461, 664
Sorry, prediction snap_scaffold_3539-snap.1-T1 fails validation.
(GTC)	 AG	461-664	GT	CAG
-recovered snap_scaffold_3539-snap.1-T1, internal, 461, 664

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 268, 441
Couldn't classify 489, 846
Sorry, prediction GeneMark_model.111093_t fails validation.
(GCC)	 AG	268-441	GT	TGG
(GCC)	 AG	489-846	GT	GTG
-recovered GeneMark_model.111093_t, internal, 268, 441
-recovered GeneMark_model.111093_t, internal, 489, 846

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1002
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support