-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3538

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1, 144
Couldn't classify 404, 691
Sorry, prediction Augustus_model.g42375.t1 fails validation.
(TGC)	 CC	1-144	GT	GGG
(AGG)	 AG	404-691	GT	TGG
-recovered Augustus_model.g42375.t1, internal, 404, 691
Couldn't classify 18, 144
Couldn't classify 404, 705
Sorry, prediction pasa_asmbl_40986.p1 fails validation.
(GAC)	 TC	18-144	GT	GGG
(AGG)	 AG	404-705	CT	CCC
Valid prediction for GlimmerHMM_glimmerT_63383-T1
Couldn't classify 9, 144
Sorry, prediction GeneMark_model.111092_t fails validation.
(GGC)	 AG	9-144	GT	GGG
(AGG)	 AG	404-532	GT	TGG
(CCA)	 AG	555-679	CC	GAC
-recovered GeneMark_model.111092_t, terminal, 555, 679
-recovered GeneMark_model.111092_t, internal, 9, 144
-recovered GeneMark_model.111092_t, internal, 404, 532
Couldn't classify 404, 691
Sorry, prediction snap_scaffold_3538-snap.1-T1 fails validation.
(ATG)	 AG	54-144	GT	GGG
(AGG)	 AG	404-691	GT	TGG
-recovered snap_scaffold_3538-snap.1-T1, initial, 54, 144
-recovered snap_scaffold_3538-snap.1-T1, internal, 54, 144
-recovered snap_scaffold_3538-snap.1-T1, internal, 404, 691

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1002
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support