-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3537

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.111091_t
Couldn't classify 44, 52
Sorry, prediction GeneMark_model.111090_t fails validation.
(GAG)	 AG	44-52	GT	AAG
(GAG)	 AG	78-137	GT	AAG
(GAG)	 AG	163-171	GT	AAG
(AAG)	 AG	197-244	GT	AAG
(GAG)	 AG	287-295	GT	AAG
(AGG)	 AG	319-351	GT	AAG
(ACA)	 AG	382-402	GT	AAG
(GAG)	 AG	428-436	GT	AAG
(GAG)	 AG	462-470	GT	AAG
(ACA)	 AG	501-521	GT	AAG
(AGG)	 AG	545-599	GA	AGG
-recovered GeneMark_model.111090_t, terminal, 545, 599
-recovered GeneMark_model.111090_t, internal, 44, 52
-recovered GeneMark_model.111090_t, internal, 78, 137
-recovered GeneMark_model.111090_t, internal, 163, 171
-recovered GeneMark_model.111090_t, internal, 197, 244
-recovered GeneMark_model.111090_t, internal, 287, 295
-recovered GeneMark_model.111090_t, internal, 319, 351
-recovered GeneMark_model.111090_t, internal, 382, 402
-recovered GeneMark_model.111090_t, internal, 428, 436
-recovered GeneMark_model.111090_t, internal, 462, 470
-recovered GeneMark_model.111090_t, internal, 501, 521

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1003
-exon list size: 30


building trellis

3.1    
6.2    
9.4    
12.5    
15.6    
18.8    
21.9    
25.0    
28.1    
31.2    
34.4    
37.5    
40.6    
43.8    
46.9    
50.0    
53.1    
56.2    
59.4    
62.5    
65.6    
68.8    
71.9    
75.0    
78.1    
81.2    
84.4    
87.5    
90.6    
93.8    
96.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support