-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_353

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61743-T1
Couldn't classify 1341, 1453
Sorry, prediction GeneMark_model.107395_t fails validation.
(CAG)	 AG	1341-1453	GT	AGG
(AGG)	 AG	3669-3797	GT	TTG
(GGG)	 AG	3870-4101	AA	GAA
-recovered GeneMark_model.107395_t, terminal, 3870, 4101
-recovered GeneMark_model.107395_t, internal, 1341, 1453
-recovered GeneMark_model.107395_t, internal, 3669, 3797
Valid prediction for snap_scaffold_353-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 118, 166
Sorry, prediction Augustus_model.g41039.t1 fails validation.
(GTA)	 AG	118-166	GT	AGG
(GTA)	 AG	518-567	CT	AGC
-recovered Augustus_model.g41039.t1, terminal, 518, 567
-recovered Augustus_model.g41039.t1, internal, 118, 166
Valid prediction for GeneMark_model.107398_t
Couldn't classify 118, 166
Sorry, prediction snap_scaffold_353-snap.2-T1 fails validation.
(GTA)	 AG	118-166	GT	AGG
(GAC)	 AG	607-803	GT	AGG
(CCC)	 AG	3779-3838	GT	AGG
(AGT)	 AG	6458-6556	GG	AAG
-recovered snap_scaffold_353-snap.2-T1, terminal, 6458, 6556
-recovered snap_scaffold_353-snap.2-T1, internal, 118, 166
-recovered snap_scaffold_353-snap.2-T1, internal, 607, 803
-recovered snap_scaffold_353-snap.2-T1, internal, 3779, 3838
Valid prediction for GeneMark_model.107396_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6093, rend_intergenic: 1258  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7813
-exon list size: 29


building trellis

3.2    
6.5    
9.7    
12.9    
16.1    
19.4    
22.6    
25.8    
29.0    
32.3    
35.5    
38.7    
41.9    
45.2    
48.4    
51.6    
54.8    
58.1    
61.3    
64.5    
67.7    
71.0    
74.2    
77.4    
80.6    
83.9    
87.1    
90.3    
93.5    
96.8    
-found 4 predictions from path traversal
Error with prediction: snap lend_intergenic: 6093, rend_intergenic: 1258  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support