-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3529

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 34, 42
Couldn't classify 744, 794
Sorry, prediction GeneMark_model.111086_t fails validation.
(AGG)	 AG	34-42	GT	GAG
(AGA)	 AG	66-77	GT	AGG
(GGA)	 AG	100-159	GT	GGG
(GGG)	 AG	180-209	GT	CGG
(AGA)	 AG	279-362	GT	GAG
(GGA)	 AG	688-702	GT	GAG
(AGG)	 AG	744-794	GT	GAG
-recovered GeneMark_model.111086_t, terminal, 66, 77
-recovered GeneMark_model.111086_t, internal, 34, 42
-recovered GeneMark_model.111086_t, internal, 66, 77
-recovered GeneMark_model.111086_t, internal, 100, 159
-recovered GeneMark_model.111086_t, internal, 180, 209
-recovered GeneMark_model.111086_t, internal, 279, 362
-recovered GeneMark_model.111086_t, internal, 688, 702
-recovered GeneMark_model.111086_t, internal, 744, 794

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1004
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support