-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3528

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 56, 112
Sorry, prediction GeneMark_model.111084_t fails validation.
(ACA)	 AG	56-112	GT	GAG
(AGA)	 AG	138-306	TA	AGT
-recovered GeneMark_model.111084_t, terminal, 138, 306
-recovered GeneMark_model.111084_t, internal, 56, 112

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 287, 453
Couldn't classify 691, 830
Sorry, prediction Augustus_model.g42373.t1 fails validation.
(CCC)	 AG	287-453	GT	AGG
(GCG)	 AG	691-830	GT	AGG
-recovered Augustus_model.g42373.t1, internal, 287, 453
-recovered Augustus_model.g42373.t1, internal, 691, 830
Couldn't classify 287, 453
Sorry, prediction GeneMark_model.111085_t fails validation.
(CCC)	 AG	287-453	GT	AGG
(TGA)	 AG	564-566	CA	GAC
-recovered GeneMark_model.111085_t, terminal, 564, 566
-recovered GeneMark_model.111085_t, internal, 287, 453
Couldn't classify 287, 453
Couldn't classify 691, 830
Sorry, prediction snap_scaffold_3528-snap.1-T1 fails validation.
(CCC)	 AG	287-453	GT	AGG
(GCG)	 AG	691-830	GT	AGG
-recovered snap_scaffold_3528-snap.1-T1, internal, 287, 453
-recovered snap_scaffold_3528-snap.1-T1, internal, 691, 830

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1004
-exon list size: 8


building trellis

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40.0    
50.0    
60.0    
70.0    
80.0    
90.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support