-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3526

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 216, 328
Couldn't classify 896, 962
Sorry, prediction snap_scaffold_3526-snap.1-T1 fails validation.
(AGG)	 AG	216-328	GT	GAG
(GAG)	 AG	547-801	GT	CAG
(AAA)	 AG	896-962	GT	GGG
-recovered snap_scaffold_3526-snap.1-T1, internal, 216, 328
-recovered snap_scaffold_3526-snap.1-T1, internal, 547, 801
-recovered snap_scaffold_3526-snap.1-T1, internal, 896, 962
Couldn't classify 232, 240
Sorry, prediction GeneMark_model.111083_t fails validation.
(GAG)	 AG	232-240	GT	GAG
(AGG)	 AG	264-308	GT	GAG
(GCA)	 AG	334-348	GT	GAG
(GCA)	 AG	374-436	GT	GAG
(AGA)	 AG	466-504	GT	GAG
(AGG)	 AG	528-632	GT	GAG
(GCA)	 AG	666-795	GT	TGG
(AGC)	 AG	846-943	GT	GAG
add_exon() Sorry, GeneMark_model.111083_t 846-943-terminal-2 is invalid.
-recovered GeneMark_model.111083_t, terminal, 846, 943
-recovered GeneMark_model.111083_t, internal, 232, 240
-recovered GeneMark_model.111083_t, internal, 264, 308
-recovered GeneMark_model.111083_t, internal, 334, 348
-recovered GeneMark_model.111083_t, internal, 374, 436
-recovered GeneMark_model.111083_t, internal, 466, 504
-recovered GeneMark_model.111083_t, internal, 528, 632
-recovered GeneMark_model.111083_t, internal, 666, 795
-recovered GeneMark_model.111083_t, internal, 846, 943

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1005
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support