-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3522

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 76, 182
Sorry, prediction Augustus_model.g42372.t1 fails validation.
(GGA)	 AG	76-182	GT	GGG
(ATC)	 AG	552-589	AG	GAA
-recovered Augustus_model.g42372.t1, terminal, 552, 589
-recovered Augustus_model.g42372.t1, internal, 76, 182
Couldn't classify 76, 182
Sorry, prediction snap_scaffold_3522-snap.1-T1 fails validation.
(GGA)	 AG	76-182	GT	GGG
(ACC)	 AG	584-657	TG	AAT
-recovered snap_scaffold_3522-snap.1-T1, terminal, 584, 657
-recovered snap_scaffold_3522-snap.1-T1, internal, 76, 182

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 113, 122
Couldn't classify 967, 981
Sorry, prediction GeneMark_model.111081_t fails validation.
(CCT)	 AG	113-122	GT	GTG
(AGA)	 AG	444-527	GT	ACG
(GAG)	 AG	721-759	GT	AAG
(ACA)	 AG	789-858	GT	AGG
(AAG)	 AG	913-938	GT	AGG
(GGT)	 AG	967-981	GT	GGG
add_exon() Sorry, GeneMark_model.111081_t 913-938-terminal-2 is invalid.
-recovered GeneMark_model.111081_t, terminal, 913, 938
-recovered GeneMark_model.111081_t, internal, 113, 122
-recovered GeneMark_model.111081_t, internal, 444, 527
-recovered GeneMark_model.111081_t, internal, 721, 759
-recovered GeneMark_model.111081_t, internal, 789, 858
-recovered GeneMark_model.111081_t, internal, 913, 938
-recovered GeneMark_model.111081_t, internal, 967, 981

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1006
-exon list size: 18


building trellis

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35.0    
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45.0    
50.0    
55.0    
60.0    
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95.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support