-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3521

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 400, 420
Couldn't classify 971, 979
Sorry, prediction GeneMark_model.111080_t fails validation.
(AGA)	 AG	400-420	GT	GAG
(AGA)	 AG	448-456	GT	AGG
(AGT)	 AG	482-502	GC	GAG
(AGA)	 AG	524-544	GT	GAG
(GGT)	 AG	568-582	GT	GGG
(AGA)	 AG	604-612	GT	GGG
(GGT)	 AG	640-654	GT	GGG
(GGT)	 AG	684-698	GT	GGG
(AAA)	 AG	722-742	GT	GGG
(GGT)	 AG	768-782	GT	GAG
(GGT)	 AG	810-824	GT	GGG
(GGT)	 AG	852-866	GT	GAG
(GGG)	 AG	971-979	GT	CGG
-recovered GeneMark_model.111080_t, internal, 400, 420
-recovered GeneMark_model.111080_t, internal, 448, 456
-recovered GeneMark_model.111080_t, internal, 482, 502
-recovered GeneMark_model.111080_t, internal, 524, 544
-recovered GeneMark_model.111080_t, internal, 568, 582
-recovered GeneMark_model.111080_t, internal, 604, 612
-recovered GeneMark_model.111080_t, internal, 640, 654
-recovered GeneMark_model.111080_t, internal, 684, 698
-recovered GeneMark_model.111080_t, internal, 722, 742
-recovered GeneMark_model.111080_t, internal, 768, 782
-recovered GeneMark_model.111080_t, internal, 810, 824
-recovered GeneMark_model.111080_t, internal, 852, 866
-recovered GeneMark_model.111080_t, internal, 971, 979

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1006
-exon list size: 29


building trellis

3.2    
6.5    
9.7    
12.9    
16.1    
19.4    
22.6    
25.8    
29.0    
32.3    
35.5    
38.7    
41.9    
45.2    
48.4    
51.6    
54.8    
58.1    
61.3    
64.5    
67.7    
71.0    
74.2    
77.4    
80.6    
83.9    
87.1    
90.3    
93.5    
96.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support