-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_352

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107392_t
Couldn't classify 226, 373
Couldn't classify 3169, 3533
Sorry, prediction snap_scaffold_352-snap.1-T1 fails validation.
(ATT)	 AG	226-373	GT	GAG
(AGA)	 AG	2924-3068	GT	CAG
(GTT)	 AG	3169-3533	GT	CAG
-recovered snap_scaffold_352-snap.1-T1, internal, 226, 373
-recovered snap_scaffold_352-snap.1-T1, internal, 2924, 3068
-recovered snap_scaffold_352-snap.1-T1, internal, 3169, 3533

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107393_t
Valid prediction for snap_scaffold_352-snap.3-T1
Couldn't classify 7514, 7572
Sorry, prediction GeneMark_model.107391_t fails validation.
(ATG)	 CA	4982-4989	GT	ATG
(AAG)	 AG	5129-5173	GT	GGG
(ACG)	 AG	5200-5316	GT	CAG
(GGA)	 AG	5339-5365	GT	AGG
(AGA)	 AG	5954-6133	GT	GGG
(GGA)	 AG	6161-6559	GT	GAG
(AGG)	 AG	6597-6620	GT	AGG
(AGA)	 AG	6657-6731	GT	GAG
(AGA)	 AG	6754-6774	GT	AGG
(AGG)	 AG	7514-7572	GT	CTG
-recovered GeneMark_model.107391_t, initial, 4982, 4989
-recovered GeneMark_model.107391_t, internal, 5129, 5173
-recovered GeneMark_model.107391_t, internal, 5200, 5316
-recovered GeneMark_model.107391_t, internal, 5339, 5365
-recovered GeneMark_model.107391_t, internal, 5954, 6133
-recovered GeneMark_model.107391_t, internal, 6161, 6559
-recovered GeneMark_model.107391_t, internal, 6597, 6620
-recovered GeneMark_model.107391_t, internal, 6657, 6731
-recovered GeneMark_model.107391_t, internal, 6754, 6774
-recovered GeneMark_model.107391_t, internal, 7514, 7572
Couldn't classify 1028, 1130
Sorry, prediction GeneMark_model.107394_t fails validation.
(AGG)	 AG	1028-1130	GT	AGG
(AAT)	 AG	1151-1277	GT	CTG
(AGG)	 AG	1437-1462	GT	GGG
(AGG)	 AG	1489-1687	CC	GAC
-recovered GeneMark_model.107394_t, terminal, 1489, 1687
-recovered GeneMark_model.107394_t, internal, 1028, 1130
-recovered GeneMark_model.107394_t, internal, 1151, 1277
-recovered GeneMark_model.107394_t, internal, 1437, 1462
Valid prediction for snap_scaffold_352-snap.2-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_61742-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3533, rend_intergenic: 1253  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7815
-exon list size: 74


building trellis

1.3    
2.6    
3.9    
5.3    
6.6    
7.9    
9.2    
10.5    
11.8    
13.2    
14.5    
15.8    
17.1    
18.4    
19.7    
21.1    
22.4    
23.7    
25.0    
26.3    
27.6    
28.9    
30.3    
31.6    
32.9    
34.2    
35.5    
36.8    
38.2    
39.5    
40.8    
42.1    
43.4    
44.7    
46.1    
47.4    
48.7    
50.0    
51.3    
52.6    
53.9    
55.3    
56.6    
57.9    
59.2    
60.5    
61.8    
63.2    
64.5    
65.8    
67.1    
68.4    
69.7    
71.1    
72.4    
73.7    
75.0    
76.3    
77.6    
78.9    
80.3    
81.6    
82.9    
84.2    
85.5    
86.8    
88.2    
89.5    
90.8    
92.1    
93.4    
94.7    
96.1    
97.4    
98.7    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 3533, rend_intergenic: 1253  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support