-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3518

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 45, 99
Couldn't classify 769, 884
Sorry, prediction pasa_asmbl_40984.p1 fails validation.
(CCC)	 AG	45-99	GT	AGG
(AGT)	 AG	377-520	GT	CGG
(GTA)	 AG	769-884	TA	AGT
-recovered pasa_asmbl_40984.p1, internal, 45, 99
-recovered pasa_asmbl_40984.p1, internal, 377, 520
Couldn't classify 377, 520
Sorry, prediction GlimmerHMM_glimmerT_63380-T1 fails validation.
(AGT)	 AG	377-520	GT	CGG
(GTA)	 AG	769-887	GT	AAG
-recovered GlimmerHMM_glimmerT_63380-T1, terminal, 769, 887
-recovered GlimmerHMM_glimmerT_63380-T1, internal, 377, 520
-recovered GlimmerHMM_glimmerT_63380-T1, internal, 769, 887
Couldn't classify 45, 99
Couldn't classify 769, 883
Sorry, prediction snap_scaffold_3518-snap.1-T1 fails validation.
(CCC)	 AG	45-99	GT	AGG
(AGT)	 AG	377-520	GT	CGG
(GTA)	 AG	769-883	GT	AAG
-recovered snap_scaffold_3518-snap.1-T1, internal, 45, 99
-recovered snap_scaffold_3518-snap.1-T1, internal, 377, 520
-recovered snap_scaffold_3518-snap.1-T1, internal, 769, 883
Valid prediction for HiQ_model.g42370.t1
Couldn't classify 45, 60
Couldn't classify 915, 977
Sorry, prediction GeneMark_model.111077_t fails validation.
(CCC)	 AG	45-60	GT	GAG
(AGA)	 AG	168-271	GT	GGG
(AGT)	 AG	377-520	GT	CGG
(GTA)	 AG	769-883	GT	AAG
(GGG)	 AG	915-977	GT	GTG
-recovered GeneMark_model.111077_t, internal, 45, 60
-recovered GeneMark_model.111077_t, internal, 168, 271
-recovered GeneMark_model.111077_t, internal, 377, 520
-recovered GeneMark_model.111077_t, internal, 769, 883
-recovered GeneMark_model.111077_t, internal, 915, 977

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1006
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support