-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_351

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_351-snap.3-T1
Couldn't classify 7761, 7822
Sorry, prediction GeneMark_model.107390_t fails validation.
(ATG)	 TC	6917-6990	GT	CAG
(AAG)	 AG	7147-7152	GT	AGG
(GAG)	 AG	7174-7233	GT	GAG
(GGA)	 AG	7371-7466	GT	CTG
(AGA)	 AG	7685-7732	GT	AAG
(GGA)	 AG	7761-7822	GC	GGG
-recovered GeneMark_model.107390_t, initial, 6917, 6990
-recovered GeneMark_model.107390_t, internal, 7147, 7152
-recovered GeneMark_model.107390_t, internal, 7174, 7233
-recovered GeneMark_model.107390_t, internal, 7371, 7466
-recovered GeneMark_model.107390_t, internal, 7685, 7732
-recovered GeneMark_model.107390_t, internal, 7761, 7822
Couldn't classify 830, 1046
Sorry, prediction GeneMark_model.107386_t fails validation.
(ACA)	 AG	830-1046	GT	GAG
(AAG)	 AG	1070-1149	GT	AAG
(AGA)	 AG	1177-1183	CT	GAC
-recovered GeneMark_model.107386_t, terminal, 1177, 1183
-recovered GeneMark_model.107386_t, internal, 830, 1046
-recovered GeneMark_model.107386_t, internal, 1070, 1149
Valid prediction for snap_scaffold_351-snap.2-T1
add_exon() Sorry, snap_scaffold_351-snap.2-T1 805-1106-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61741-T1
Valid prediction for GeneMark_model.107388_t
Valid prediction for GeneMark_model.107387_t
Couldn't classify 7040, 7287
Sorry, prediction snap_scaffold_351-snap.1-T1 fails validation.
(ATG)	 AA	4933-4938	GT	TTG
(AGT)	 AG	7040-7287	GT	ATG
-recovered snap_scaffold_351-snap.1-T1, initial, 4933, 4938
-recovered snap_scaffold_351-snap.1-T1, internal, 7040, 7287

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2905, rend_intergenic: 805  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7837
-exon list size: 38


building trellis

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-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 2905, rend_intergenic: 805  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support