-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3501

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 43, 171
Couldn't classify 923, 986
Sorry, prediction GeneMark_model.111068_t fails validation.
(AGA)	 AG	43-171	GT	CTG
(AGA)	 AG	197-289	GT	CTG
(AGA)	 AG	317-409	GT	CTG
(AGA)	 AG	433-507	GT	CTG
(AGA)	 AG	533-661	GT	CTG
(AGA)	 AG	685-711	GT	CTG
(AGA)	 AG	737-745	GT	CTG
(AGA)	 AG	769-897	GT	CTG
(AGA)	 AG	923-986	GT	TGG
-recovered GeneMark_model.111068_t, internal, 43, 171
-recovered GeneMark_model.111068_t, internal, 197, 289
-recovered GeneMark_model.111068_t, internal, 317, 409
-recovered GeneMark_model.111068_t, internal, 433, 507
-recovered GeneMark_model.111068_t, internal, 533, 661
-recovered GeneMark_model.111068_t, internal, 685, 711
-recovered GeneMark_model.111068_t, internal, 737, 745
-recovered GeneMark_model.111068_t, internal, 769, 897
-recovered GeneMark_model.111068_t, internal, 923, 986

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1009
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support