-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3499

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 117, 228
Couldn't classify 778, 885
Sorry, prediction snap_scaffold_3499-snap.2-T1 fails validation.
(CTT)	 AG	117-228	GT	TGG
(TAC)	 AG	778-885	GT	AGG
-recovered snap_scaffold_3499-snap.2-T1, internal, 117, 228
-recovered snap_scaffold_3499-snap.2-T1, internal, 778, 885

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 71, 197
Couldn't classify 973, 999
Sorry, prediction GeneMark_model.111067_t fails validation.
(TGC)	 AG	71-197	GT	GAG
(GCA)	 AG	740-943	GT	GAG
(ATG)	 AG	973-999	GC	GTG
add_exon() Sorry, GeneMark_model.111067_t 973-999-initial-1 is invalid.
-recovered GeneMark_model.111067_t, initial, 973, 999
-recovered GeneMark_model.111067_t, internal, 71, 197
-recovered GeneMark_model.111067_t, internal, 740, 943
-recovered GeneMark_model.111067_t, internal, 973, 999
Couldn't classify 71, 197
Couldn't classify 740, 902
Sorry, prediction snap_scaffold_3499-snap.1-T1 fails validation.
(TGC)	 AG	71-197	GT	GAG
(GCA)	 AG	740-902	GT	AGG
-recovered snap_scaffold_3499-snap.1-T1, internal, 71, 197
-recovered snap_scaffold_3499-snap.1-T1, internal, 740, 902
Couldn't classify 740, 902
Sorry, prediction Augustus_model.g42364.t1 fails validation.
(ATG)	 TG	130-197	GT	GAG
(GCA)	 AG	740-902	GT	AGG
-recovered Augustus_model.g42364.t1, initial, 130, 197
-recovered Augustus_model.g42364.t1, internal, 740, 902
Valid prediction for GlimmerHMM_glimmerT_63376-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63376-T1 740-947-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 939, rend_intergenic: 117  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 1009
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 939, rend_intergenic: 117  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support