-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3498

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 248, 349
Couldn't classify 886, 1009
Sorry, prediction Augustus_model.g42363.t1 fails validation.
(GTA)	 AG	248-349	GT	AAG
(GTC)	 AG	886-1009		GC
-recovered Augustus_model.g42363.t1, internal, 248, 349
Couldn't classify 248, 349
Couldn't classify 886, 980
Sorry, prediction snap_scaffold_3498-snap.1-T1 fails validation.
(GTA)	 AG	248-349	GT	AAG
(GTC)	 AG	886-980	GT	AAG
-recovered snap_scaffold_3498-snap.1-T1, internal, 248, 349
-recovered snap_scaffold_3498-snap.1-T1, internal, 886, 980

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 20, 199
Sorry, prediction GeneMark_model.111066_t fails validation.
(CGT)	 AG	20-199	GC	GAG
(AGG)	 AG	224-299	AC	AGA
-recovered GeneMark_model.111066_t, terminal, 224, 299
-recovered GeneMark_model.111066_t, internal, 20, 199

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1009
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support