-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3493

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 26, 63
Couldn't classify 799, 903
Sorry, prediction GeneMark_model.111064_t fails validation.
(GAG)	 AG	26-63	GT	CAG
(AGA)	 AG	95-103	GT	GAG
(AAA)	 AG	125-133	GT	GAG
(AAA)	 AG	155-163	GT	GAG
(AGA)	 AG	295-303	GT	GAG
(AGA)	 AG	799-903	GT	ATG
-recovered GeneMark_model.111064_t, internal, 26, 63
-recovered GeneMark_model.111064_t, internal, 95, 103
-recovered GeneMark_model.111064_t, internal, 125, 133
-recovered GeneMark_model.111064_t, internal, 155, 163
-recovered GeneMark_model.111064_t, internal, 295, 303
-recovered GeneMark_model.111064_t, internal, 799, 903

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1010
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support